miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 54045 0.66 0.795102
Target:  5'- cGGG-CCGGAuGUGGUGGAggacgAGAGCg- -3'
miRNA:   3'- aCCCgGGUCUcCAUCGCCU-----UCUCGag -5'
28861 5' -59.1 NC_006146.1 + 157319 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 154241 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 151163 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 148085 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 145007 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 141929 0.66 0.758452
Target:  5'- aGGGCCCugGGAGGccccuguccGCgaGGGAGAGuCUCu -3'
miRNA:   3'- aCCCGGG--UCUCCau-------CG--CCUUCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 44563 0.66 0.757511
Target:  5'- gGGGCuCCGGGuGGcUGGCGGAaaugccaGGAGgaCg -3'
miRNA:   3'- aCCCG-GGUCU-CC-AUCGCCU-------UCUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 60957 0.66 0.758452
Target:  5'- uUGaGGCCCGGGGGUGGgGGGucacCUUg -3'
miRNA:   3'- -AC-CCGGGUCUCCAUCgCCUucucGAG- -5'
28861 5' -59.1 NC_006146.1 + 85131 0.66 0.767798
Target:  5'- aGGGCCUcuGGGaUGGcCGGggGGGUa- -3'
miRNA:   3'- aCCCGGGucUCC-AUC-GCCuuCUCGag -5'
28861 5' -59.1 NC_006146.1 + 101690 0.66 0.775192
Target:  5'- cGGGCggcgCUAGAGGgggggagagagcAGCGGggGuuuGGCUCc -3'
miRNA:   3'- aCCCG----GGUCUCCa-----------UCGCCuuC---UCGAG- -5'
28861 5' -59.1 NC_006146.1 + 88224 0.66 0.777028
Target:  5'- uUGGGCCUguguuugcucGGGGGUcGGUGGuacGGGCUg -3'
miRNA:   3'- -ACCCGGG----------UCUCCA-UCGCCuu-CUCGAg -5'
28861 5' -59.1 NC_006146.1 + 112846 0.66 0.795102
Target:  5'- aGGGCCgAcAGGUAGCcGGcGGAGaCUa -3'
miRNA:   3'- aCCCGGgUcUCCAUCG-CCuUCUC-GAg -5'
28861 5' -59.1 NC_006146.1 + 101852 0.66 0.794211
Target:  5'- cGGGCugccgcaCCAcGGGUGGCGGGGcGAGgaCg -3'
miRNA:   3'- aCCCG-------GGUcUCCAUCGCCUU-CUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 13937 0.66 0.791531
Target:  5'- gUGGGCCCGGGGG-AGCccaGGAcaacuuuaucagcGAGCg- -3'
miRNA:   3'- -ACCCGGGUCUCCaUCG---CCUu------------CUCGag -5'
28861 5' -59.1 NC_006146.1 + 51212 0.66 0.785228
Target:  5'- aGGGCauCCAcgaggccGGGGUGGCGGguGAGgUUg -3'
miRNA:   3'- aCCCG--GGU-------CUCCAUCGCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 75808 0.66 0.777028
Target:  5'- cGGGCgCCGccuucGAGGcccuGCGGGacaugcaccaggGGAGCUCu -3'
miRNA:   3'- aCCCG-GGU-----CUCCau--CGCCU------------UCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 138807 0.66 0.777028
Target:  5'- aUGGGCCCGG-GGU--UGGu-GAGCUa -3'
miRNA:   3'- -ACCCGGGUCuCCAucGCCuuCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 129245 0.66 0.777028
Target:  5'- cGGGCCCAGgugaggcgcgaGGGUcAG-GGAuguGGGGCUg -3'
miRNA:   3'- aCCCGGGUC-----------UCCA-UCgCCU---UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 33209 0.66 0.777028
Target:  5'- gGGGaggCCGGAGGgggAGcCGGGauGGGGCUg -3'
miRNA:   3'- aCCCg--GGUCUCCa--UC-GCCU--UCUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.