miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 42658 1.08 0.001633
Target:  5'- gUGGGCCCAGAGGUAGCGGAAGAGCUCc -3'
miRNA:   3'- -ACCCGGGUCUCCAUCGCCUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 99147 0.8 0.15049
Target:  5'- gGGGCuCCAGcgaccggcAGGUGGCGGAGGgccAGCUCg -3'
miRNA:   3'- aCCCG-GGUC--------UCCAUCGCCUUC---UCGAG- -5'
28861 5' -59.1 NC_006146.1 + 139077 0.78 0.197853
Target:  5'- cGGGCCCu--GGUGGCGcGggGGGCUg -3'
miRNA:   3'- aCCCGGGucuCCAUCGC-CuuCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 156516 0.77 0.223402
Target:  5'- cGcGGCCCGGAGGggAGCGGGAG-GCg- -3'
miRNA:   3'- aC-CCGGGUCUCCa-UCGCCUUCuCGag -5'
28861 5' -59.1 NC_006146.1 + 154506 0.77 0.228837
Target:  5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3'
miRNA:   3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 145272 0.77 0.228837
Target:  5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3'
miRNA:   3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 151428 0.77 0.228837
Target:  5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3'
miRNA:   3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 148350 0.77 0.228837
Target:  5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3'
miRNA:   3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 157584 0.77 0.228837
Target:  5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3'
miRNA:   3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 142194 0.77 0.228837
Target:  5'- gGGGCUCAGAGGggAGCGGAgaccaGGAGgaCg -3'
miRNA:   3'- aCCCGGGUCUCCa-UCGCCU-----UCUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 110390 0.76 0.251703
Target:  5'- uUGGGCCCAGuGGgAGCacccucgccgucGGggGAGCUg -3'
miRNA:   3'- -ACCCGGGUCuCCaUCG------------CCuuCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 14910 0.75 0.303032
Target:  5'- gUGccCCCGGAGGUGGCGGAgcucucGGAGCUg -3'
miRNA:   3'- -ACccGGGUCUCCAUCGCCU------UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 32142 0.74 0.317062
Target:  5'- gGGGUgCuGGGGUGGgGGAuGGGCUCa -3'
miRNA:   3'- aCCCGgGuCUCCAUCgCCUuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 135972 0.74 0.317062
Target:  5'- gGGGUgCuGGGGUGGgGGAuGGGCUCa -3'
miRNA:   3'- aCCCGgGuCUCCAUCgCCUuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 161744 0.74 0.324258
Target:  5'- --aGCCCGGGGGUGGCGGcuGAGgUCc -3'
miRNA:   3'- accCGGGUCUCCAUCGCCuuCUCgAG- -5'
28861 5' -59.1 NC_006146.1 + 47988 0.74 0.330839
Target:  5'- gUGGGgUCAGAGGUggcugguGGCGGGAG-GCUUg -3'
miRNA:   3'- -ACCCgGGUCUCCA-------UCGCCUUCuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 54874 0.74 0.331576
Target:  5'- cGGGCCgUGGAGGccuuaaccGGcCGGAGGAGCUCu -3'
miRNA:   3'- aCCCGG-GUCUCCa-------UC-GCCUUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 57010 0.74 0.331576
Target:  5'- gGGGCCauggccgaggaGGAGGUGGCGGuGGAGUg- -3'
miRNA:   3'- aCCCGGg----------UCUCCAUCGCCuUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 55969 0.74 0.339014
Target:  5'- --cGCCCAGGGGUAGCGGuuGGuCUCg -3'
miRNA:   3'- accCGGGUCUCCAUCGCCuuCUcGAG- -5'
28861 5' -59.1 NC_006146.1 + 51587 0.74 0.346572
Target:  5'- gGGGCCCGGGGG-AGCcaGAGGGGC-Ca -3'
miRNA:   3'- aCCCGGGUCUCCaUCGc-CUUCUCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.