miRNA display CGI


Results 1 - 20 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 4670 0.67 0.739442
Target:  5'- cUGGGCCgGGuGGgcgaGGCGGggGcAGaUCa -3'
miRNA:   3'- -ACCCGGgUCuCCa---UCGCCuuC-UCgAG- -5'
28861 5' -59.1 NC_006146.1 + 12993 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 13380 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 13937 0.66 0.791531
Target:  5'- gUGGGCCCGGGGG-AGCccaGGAcaacuuuaucagcGAGCg- -3'
miRNA:   3'- -ACCCGGGUCUCCaUCG---CCUu------------CUCGag -5'
28861 5' -59.1 NC_006146.1 + 14083 0.71 0.482034
Target:  5'- cGGGUCUGGAGGUcuagaguccccagGGCGGGaugucGGGGCUg -3'
miRNA:   3'- aCCCGGGUCUCCA-------------UCGCCU-----UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 14744 0.67 0.720069
Target:  5'- gGGGCUCuuugagaacGAGGUcaGGCaGGcGGGGCUCg -3'
miRNA:   3'- aCCCGGGu--------CUCCA--UCG-CCuUCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 14842 0.71 0.511377
Target:  5'- cGGGCCCGG-GGccGCGGGAG-GC-Cg -3'
miRNA:   3'- aCCCGGGUCuCCauCGCCUUCuCGaG- -5'
28861 5' -59.1 NC_006146.1 + 14910 0.75 0.303032
Target:  5'- gUGccCCCGGAGGUGGCGGAgcucucGGAGCUg -3'
miRNA:   3'- -ACccGGGUCUCCAUCGCCU------UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 15056 0.71 0.492356
Target:  5'- cGGGCCUgcgaGGAGGcacUGGCGG--GGGCUCc -3'
miRNA:   3'- aCCCGGG----UCUCC---AUCGCCuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 16071 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 16458 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 18855 0.68 0.680515
Target:  5'- cGGGCgCugccGGGGUGGUGGAcgugcgGGGGcCUCa -3'
miRNA:   3'- aCCCGgGu---CUCCAUCGCCU------UCUC-GAG- -5'
28861 5' -59.1 NC_006146.1 + 19149 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 19536 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 20191 0.67 0.748996
Target:  5'- aGGGCCCccGGGGgcGCaGGAG-GCUg -3'
miRNA:   3'- aCCCGGGu-CUCCauCGcCUUCuCGAg -5'
28861 5' -59.1 NC_006146.1 + 22227 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 22614 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 25305 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5'
28861 5' -59.1 NC_006146.1 + 25692 0.71 0.482968
Target:  5'- gGGGCCCAGGGccccuaguccaGaGGaCGGAGGAGCa- -3'
miRNA:   3'- aCCCGGGUCUC-----------CaUC-GCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 28383 0.67 0.739442
Target:  5'- -aGGCCCGG-GG-AGUGGAGGGGgaUCg -3'
miRNA:   3'- acCCGGGUCuCCaUCGCCUUCUCg-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.