miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 121345 0.66 0.952893
Target:  5'- gGCCAUGCUGggccugGCCGGcgugGCCU---CCGCc -3'
miRNA:   3'- -UGGUACGAU------UGGCC----UGGGauuGGCGc -5'
28862 3' -55.1 NC_006146.1 + 129605 0.66 0.951683
Target:  5'- cGCCAUGCcuccgccgucuccgUcGCCGGGUCCU--CCGCGg -3'
miRNA:   3'- -UGGUACG--------------AuUGGCCUGGGAuuGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 5116 0.66 0.948781
Target:  5'- gGCCGUGCc-ACCGuGGCUCUgauuGAUCGCu -3'
miRNA:   3'- -UGGUACGauUGGC-CUGGGA----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 102800 0.66 0.948781
Target:  5'- gACCG-GCUGGCCGcccACCUgGAUCGCGc -3'
miRNA:   3'- -UGGUaCGAUUGGCc--UGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 142778 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 145856 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 148934 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 152012 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 155090 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 158169 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 123248 0.66 0.948781
Target:  5'- gGCCGccGC--GCUGGGCCg-GGCCGCGg -3'
miRNA:   3'- -UGGUa-CGauUGGCCUGGgaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 16803 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 13725 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 19881 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 29114 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 26036 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 22958 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 33543 0.66 0.94172
Target:  5'- uGCCcgGCUuGCCuGGCCCUggugcuccuccggggGucGCCGCGu -3'
miRNA:   3'- -UGGuaCGAuUGGcCUGGGA---------------U--UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 126864 0.66 0.939861
Target:  5'- -aCAUcGCUAaaaaaGCgGGGCCCUcGGCCGCc -3'
miRNA:   3'- ugGUA-CGAU-----UGgCCUGGGA-UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 67303 0.66 0.939861
Target:  5'- cGCCA-GCUc-CCGGGCCacguCCGCGc -3'
miRNA:   3'- -UGGUaCGAuuGGCCUGGgauuGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.