miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 124324 0.68 0.881098
Target:  5'- gGCCAUGaCgcuGCUGGcgcacgccACCCUGAUCGCc -3'
miRNA:   3'- -UGGUAC-Gau-UGGCC--------UGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 39439 0.68 0.883892
Target:  5'- cACCuggGUgcACUGGGCCCUGcuccucauaacuuguGCCGUGg -3'
miRNA:   3'- -UGGua-CGauUGGCCUGGGAU---------------UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 112869 0.68 0.873957
Target:  5'- gACUAUGCgcucguaGGCCGGGCUCUG--CGCGa -3'
miRNA:   3'- -UGGUACGa------UUGGCCUGGGAUugGCGC- -5'
28862 3' -55.1 NC_006146.1 + 154703 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 145470 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 148548 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 127569 0.68 0.859033
Target:  5'- cGCC-UGCUGGCCcugggcGGCCgaGGCCGCGc -3'
miRNA:   3'- -UGGuACGAUUGGc-----CUGGgaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 23443 0.68 0.880394
Target:  5'- aGCuCcgGCUGcCCGucucggccuacgaGGCCCUGGCCGUGg -3'
miRNA:   3'- -UG-GuaCGAUuGGC-------------CUGGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 47866 0.67 0.907416
Target:  5'- uCCA-GCgc-CCGGACCUgGGCCGCc -3'
miRNA:   3'- uGGUaCGauuGGCCUGGGaUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 117413 0.67 0.901181
Target:  5'- aGCCAgaccGCacccCCGG-CCCUGACCGaCGa -3'
miRNA:   3'- -UGGUa---CGauu-GGCCuGGGAUUGGC-GC- -5'
28862 3' -55.1 NC_006146.1 + 156063 0.67 0.924708
Target:  5'- gGCCucccGCggccCCGGGCCCgaGACCGUGc -3'
miRNA:   3'- -UGGua--CGauu-GGCCUGGGa-UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 136760 0.67 0.919181
Target:  5'- cGCCGggGCU--CCGGgagGCCC-GGCCGCGa -3'
miRNA:   3'- -UGGUa-CGAuuGGCC---UGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 159219 0.67 0.913417
Target:  5'- --aGUGUUAGuuGGGCCUacuUGGCCGCa -3'
miRNA:   3'- uggUACGAUUggCCUGGG---AUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 105572 0.67 0.917477
Target:  5'- ----aGgaGGCCGGACCCUcaccauacucgagaGGCCGCa -3'
miRNA:   3'- ugguaCgaUUGGCCUGGGA--------------UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 45673 0.67 0.919181
Target:  5'- gGCCAgugGCUccccuggauuGCUGGAUCCUgcacGACCGCc -3'
miRNA:   3'- -UGGUa--CGAu---------UGGCCUGGGA----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 24265 0.67 0.924708
Target:  5'- gACCAUGgacccaGGCCucguGACCCUGGCCGgGg -3'
miRNA:   3'- -UGGUACga----UUGGc---CUGGGAUUGGCgC- -5'
28862 3' -55.1 NC_006146.1 + 15908 0.67 0.924708
Target:  5'- aGCCAgcaacuucUGU--GCCGGGCCCUG--CGCGa -3'
miRNA:   3'- -UGGU--------ACGauUGGCCUGGGAUugGCGC- -5'
28862 3' -55.1 NC_006146.1 + 136946 0.67 0.924708
Target:  5'- gACCAcGCccacccgGACCagcGGACCCagcgGACCGCa -3'
miRNA:   3'- -UGGUaCGa------UUGG---CCUGGGa---UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 5116 0.66 0.948781
Target:  5'- gGCCGUGCc-ACCGuGGCUCUgauuGAUCGCu -3'
miRNA:   3'- -UGGUACGauUGGC-CUGGGA----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 127987 0.66 0.929479
Target:  5'- cGCCGcUGCUGacaGCCGGgacagacgGCCCUAGcgucggcCCGCa -3'
miRNA:   3'- -UGGU-ACGAU---UGGCC--------UGGGAUU-------GGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.