miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 39230 1.09 0.004109
Target:  5'- uACCAUGCUAACCGGACCCUAACCGCGa -3'
miRNA:   3'- -UGGUACGAUUGGCCUGGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 46126 0.77 0.412083
Target:  5'- -gCAUGC---CCGGGCCCUGGCCGUGc -3'
miRNA:   3'- ugGUACGauuGGCCUGGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 12072 0.77 0.420811
Target:  5'- cGCUuUGCgagGGCCGGGCCCcGGCCGUGu -3'
miRNA:   3'- -UGGuACGa--UUGGCCUGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 30225 0.76 0.455886
Target:  5'- cGCCggGCUGGCCGGAuaCCCcggaaauUGGCCGCa -3'
miRNA:   3'- -UGGuaCGAUUGGCCU--GGG-------AUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 21057 0.74 0.543231
Target:  5'- cGCUgcGCUucGCCGaGGCCCUGGCCGCc -3'
miRNA:   3'- -UGGuaCGAu-UGGC-CUGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 113657 0.74 0.5532
Target:  5'- gGCCuUGCUGACCacGGGCCCguggaccACCGUGg -3'
miRNA:   3'- -UGGuACGAUUGG--CCUGGGau-----UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 115365 0.73 0.624132
Target:  5'- gGCCGgcgugGCggcggAGCUGGagGCCCUGGCCGCu -3'
miRNA:   3'- -UGGUa----CGa----UUGGCC--UGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 44712 0.72 0.662916
Target:  5'- gGCCGUggcccccGCUGGCCGG-CCUgaugcggUGGCCGCGg -3'
miRNA:   3'- -UGGUA-------CGAUUGGCCuGGG-------AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 41734 0.71 0.722247
Target:  5'- uACC-UGCUcuACCGGGCCCUGAgacgggugggcuucCCGCc -3'
miRNA:   3'- -UGGuACGAu-UGGCCUGGGAUU--------------GGCGc -5'
28862 3' -55.1 NC_006146.1 + 76881 0.71 0.722247
Target:  5'- gGCCGUGCcccuGCCGGGCCgcaCgugggagccagaggUGACCGCGg -3'
miRNA:   3'- -UGGUACGau--UGGCCUGG---G--------------AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 122391 0.71 0.744751
Target:  5'- gGCCAggaacgcggaggUGCUGgagacccucACgCGGAUCCUGGCCGCc -3'
miRNA:   3'- -UGGU------------ACGAU---------UG-GCCUGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 48679 0.71 0.744751
Target:  5'- cCCAUGCUucGCCGGccuCCCUcgcccGCCGCu -3'
miRNA:   3'- uGGUACGAu-UGGCCu--GGGAu----UGGCGc -5'
28862 3' -55.1 NC_006146.1 + 158470 0.71 0.756293
Target:  5'- gGCCAUGCUGuucauaaACUGGACCaccucggcguccaccGCCGCGu -3'
miRNA:   3'- -UGGUACGAU-------UGGCCUGGgau------------UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 4904 0.7 0.763901
Target:  5'- cGCCugGUGacagAGCCGGACCCUcgcugucggguGGCCGUGc -3'
miRNA:   3'- -UGG--UACga--UUGGCCUGGGA-----------UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 77002 0.7 0.763901
Target:  5'- uCCGUGCUGGCCcc-CCCU-GCCGCa -3'
miRNA:   3'- uGGUACGAUUGGccuGGGAuUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 41884 0.7 0.763901
Target:  5'- cGCCGUGCc--CCGGACCUgagUCGCGu -3'
miRNA:   3'- -UGGUACGauuGGCCUGGGauuGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 128464 0.7 0.773306
Target:  5'- cGCCAUGCUGGCgGcGcgcACCC-AGCUGCGu -3'
miRNA:   3'- -UGGUACGAUUGgC-C---UGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 91784 0.7 0.79173
Target:  5'- uGCCGUGCUGGCacccgCGGGCCUUAcgaaACCaGCu -3'
miRNA:   3'- -UGGUACGAUUG-----GCCUGGGAU----UGG-CGc -5'
28862 3' -55.1 NC_006146.1 + 165807 0.7 0.80958
Target:  5'- gGCCG-GCUAGggGGGcguCCCUGGCCGCGu -3'
miRNA:   3'- -UGGUaCGAUUggCCU---GGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 13546 0.7 0.80958
Target:  5'- aACC-UGCUGcaggcGCCGGGCgCCgGGCUGCGc -3'
miRNA:   3'- -UGGuACGAU-----UGGCCUG-GGaUUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.