miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 126795 0.7 0.80958
Target:  5'- cGCCggGC-AGCCGGGgCCUGGagguuuCCGCGg -3'
miRNA:   3'- -UGGuaCGaUUGGCCUgGGAUU------GGCGC- -5'
28862 3' -55.1 NC_006146.1 + 15940 0.7 0.80958
Target:  5'- gGCCGUGCUGACCGucuCCCUcuacaacaGACCuggggGCGu -3'
miRNA:   3'- -UGGUACGAUUGGCcu-GGGA--------UUGG-----CGC- -5'
28862 3' -55.1 NC_006146.1 + 14538 0.69 0.818269
Target:  5'- aGCCug---GACCGGGCCCUGgagcugcuggGCCGCu -3'
miRNA:   3'- -UGGuacgaUUGGCCUGGGAU----------UGGCGc -5'
28862 3' -55.1 NC_006146.1 + 22744 0.69 0.826789
Target:  5'- gGCCGUaGagaagacCCGGGCCCUGACCaGCa -3'
miRNA:   3'- -UGGUA-Cgauu---GGCCUGGGAUUGG-CGc -5'
28862 3' -55.1 NC_006146.1 + 3840 0.69 0.826789
Target:  5'- cCCccGCUGcccuACCGGACCUggGAUCGCa -3'
miRNA:   3'- uGGuaCGAU----UGGCCUGGGa-UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 121143 0.69 0.835133
Target:  5'- aGCCG-GCgu-CUGGGCCUgGGCCGCGc -3'
miRNA:   3'- -UGGUaCGauuGGCCUGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 146836 0.69 0.843293
Target:  5'- cGCCA-GCguagAGcCCGGGCCUggcucggGGCCGCGu -3'
miRNA:   3'- -UGGUaCGa---UU-GGCCUGGGa------UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 62723 0.69 0.843293
Target:  5'- gGCCGUGUacaugcccaggaUAGCCGGAgCC---CCGCGg -3'
miRNA:   3'- -UGGUACG------------AUUGGCCUgGGauuGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 18897 0.69 0.851262
Target:  5'- cACUGUGCUucuACCGaGAcaCCCUGACgGUGg -3'
miRNA:   3'- -UGGUACGAu--UGGC-CU--GGGAUUGgCGC- -5'
28862 3' -55.1 NC_006146.1 + 42060 0.69 0.851262
Target:  5'- cCUGUGcCUGGCCGGGCuuaccugcuCCUgGACCGCGc -3'
miRNA:   3'- uGGUAC-GAUUGGCCUG---------GGA-UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 144759 0.68 0.859033
Target:  5'- cCCGUGCUcuuuccGACCGGGCCCcgguGCCu-- -3'
miRNA:   3'- uGGUACGA------UUGGCCUGGGau--UGGcgc -5'
28862 3' -55.1 NC_006146.1 + 127569 0.68 0.859033
Target:  5'- cGCC-UGCUGGCCcugggcGGCCgaGGCCGCGc -3'
miRNA:   3'- -UGGuACGAUUGGc-----CUGGgaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 44978 0.68 0.8666
Target:  5'- gACCGcGgUGGCCGGACCCUucucuCCaGCu -3'
miRNA:   3'- -UGGUaCgAUUGGCCUGGGAuu---GG-CGc -5'
28862 3' -55.1 NC_006146.1 + 112869 0.68 0.873957
Target:  5'- gACUAUGCgcucguaGGCCGGGCUCUG--CGCGa -3'
miRNA:   3'- -UGGUACGa------UUGGCCUGGGAUugGCGC- -5'
28862 3' -55.1 NC_006146.1 + 23443 0.68 0.880394
Target:  5'- aGCuCcgGCUGcCCGucucggccuacgaGGCCCUGGCCGUGg -3'
miRNA:   3'- -UG-GuaCGAUuGGC-------------CUGGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 124324 0.68 0.881098
Target:  5'- gGCCAUGaCgcuGCUGGcgcacgccACCCUGAUCGCc -3'
miRNA:   3'- -UGGUAC-Gau-UGGCC--------UGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 39439 0.68 0.883892
Target:  5'- cACCuggGUgcACUGGGCCCUGcuccucauaacuuguGCCGUGg -3'
miRNA:   3'- -UGGua-CGauUGGCCUGGGAU---------------UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 14816 0.68 0.887336
Target:  5'- gGCCggGCcgGAggagggcacggucUCGGGCCCggGGCCGCGg -3'
miRNA:   3'- -UGGuaCGa-UU-------------GGCCUGGGa-UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 145470 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 142392 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.