miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 123384 0.66 0.929997
Target:  5'- gGCCccGCaaccUGGCUGGAa-CUGGCCGCGg -3'
miRNA:   3'- -UGGuaCG----AUUGGCCUggGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 132746 0.66 0.929997
Target:  5'- cCCcgGUUcuCCGGGgCCggauGCCGCGg -3'
miRNA:   3'- uGGuaCGAuuGGCCUgGGau--UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 42471 0.66 0.929997
Target:  5'- cGCCcgGuCUGcggcCCGGAucacccucCCCUGGCCGUGu -3'
miRNA:   3'- -UGGuaC-GAUu---GGCCU--------GGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 113691 0.66 0.935047
Target:  5'- gGCCcgGCcu-CCGG-CCCgggGACgGCGg -3'
miRNA:   3'- -UGGuaCGauuGGCCuGGGa--UUGgCGC- -5'
28862 3' -55.1 NC_006146.1 + 39428 0.66 0.935047
Target:  5'- ----aGUUGGCCGGGgCCUGGCCcGUGa -3'
miRNA:   3'- ugguaCGAUUGGCCUgGGAUUGG-CGC- -5'
28862 3' -55.1 NC_006146.1 + 54045 0.66 0.935047
Target:  5'- gGCCAUGUcGGCgguggucaGGGCCCaccUGGCCGCc -3'
miRNA:   3'- -UGGUACGaUUGg-------CCUGGG---AUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 34176 0.66 0.939861
Target:  5'- --gGUGCgcccccAGCCGGACCCUGguGCCagGCa -3'
miRNA:   3'- uggUACGa-----UUGGCCUGGGAU--UGG--CGc -5'
28862 3' -55.1 NC_006146.1 + 61490 0.66 0.939861
Target:  5'- gGCCAaa-----CGGGCCCUGACCGaCGg -3'
miRNA:   3'- -UGGUacgauugGCCUGGGAUUGGC-GC- -5'
28862 3' -55.1 NC_006146.1 + 67303 0.66 0.939861
Target:  5'- cGCCA-GCUc-CCGGGCCacguCCGCGc -3'
miRNA:   3'- -UGGUaCGAuuGGCCUGGgauuGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 127619 0.66 0.939861
Target:  5'- cGCUagGCaccuGCCGGACCUccaGGCCGCc -3'
miRNA:   3'- -UGGuaCGau--UGGCCUGGGa--UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 33119 0.66 0.939861
Target:  5'- cGCCGgcggGUUcGCCGGGCCgCUGccCCGCu -3'
miRNA:   3'- -UGGUa---CGAuUGGCCUGG-GAUu-GGCGc -5'
28862 3' -55.1 NC_006146.1 + 17199 0.66 0.939861
Target:  5'- gACCAUGCacgAGaaguaCGaGGCCCUccagGACCGCu -3'
miRNA:   3'- -UGGUACGa--UUg----GC-CUGGGA----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 126864 0.66 0.939861
Target:  5'- -aCAUcGCUAaaaaaGCgGGGCCCUcGGCCGCc -3'
miRNA:   3'- ugGUA-CGAU-----UGgCCUGGGA-UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 138006 0.66 0.939861
Target:  5'- --gGUGCgcccccAGCCGGACCCUGguGCCagGCa -3'
miRNA:   3'- uggUACGa-----UUGGCCUGGGAU--UGG--CGc -5'
28862 3' -55.1 NC_006146.1 + 33543 0.66 0.94172
Target:  5'- uGCCcgGCUuGCCuGGCCCUggugcuccuccggggGucGCCGCGu -3'
miRNA:   3'- -UGGuaCGAuUGGcCUGGGA---------------U--UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 19881 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 13725 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 26036 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 16803 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 22958 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.