miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 3840 0.69 0.826789
Target:  5'- cCCccGCUGcccuACCGGACCUggGAUCGCa -3'
miRNA:   3'- uGGuaCGAU----UGGCCUGGGa-UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 4904 0.7 0.763901
Target:  5'- cGCCugGUGacagAGCCGGACCCUcgcugucggguGGCCGUGc -3'
miRNA:   3'- -UGG--UACga--UUGGCCUGGGA-----------UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 5116 0.66 0.948781
Target:  5'- gGCCGUGCc-ACCGuGGCUCUgauuGAUCGCu -3'
miRNA:   3'- -UGGUACGauUGGC-CUGGGA----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 12072 0.77 0.420811
Target:  5'- cGCUuUGCgagGGCCGGGCCCcGGCCGUGu -3'
miRNA:   3'- -UGGuACGa--UUGGCCUGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 13546 0.7 0.80958
Target:  5'- aACC-UGCUGcaggcGCCGGGCgCCgGGCUGCGc -3'
miRNA:   3'- -UGGuACGAU-----UGGCCUG-GGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 13725 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 14538 0.69 0.818269
Target:  5'- aGCCug---GACCGGGCCCUGgagcugcuggGCCGCu -3'
miRNA:   3'- -UGGuacgaUUGGCCUGGGAU----------UGGCGc -5'
28862 3' -55.1 NC_006146.1 + 14816 0.68 0.887336
Target:  5'- gGCCggGCcgGAggagggcacggucUCGGGCCCggGGCCGCGg -3'
miRNA:   3'- -UGGuaCGa-UU-------------GGCCUGGGa-UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 15908 0.67 0.924708
Target:  5'- aGCCAgcaacuucUGU--GCCGGGCCCUG--CGCGa -3'
miRNA:   3'- -UGGU--------ACGauUGGCCUGGGAUugGCGC- -5'
28862 3' -55.1 NC_006146.1 + 15940 0.7 0.80958
Target:  5'- gGCCGUGCUGACCGucuCCCUcuacaacaGACCuggggGCGu -3'
miRNA:   3'- -UGGUACGAUUGGCcu-GGGA--------UUGG-----CGC- -5'
28862 3' -55.1 NC_006146.1 + 16803 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 17199 0.66 0.939861
Target:  5'- gACCAUGCacgAGaaguaCGaGGCCCUccagGACCGCu -3'
miRNA:   3'- -UGGUACGa--UUg----GC-CUGGGA----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 18897 0.69 0.851262
Target:  5'- cACUGUGCUucuACCGaGAcaCCCUGACgGUGg -3'
miRNA:   3'- -UGGUACGAu--UGGC-CU--GGGAUUGgCGC- -5'
28862 3' -55.1 NC_006146.1 + 19881 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 21057 0.74 0.543231
Target:  5'- cGCUgcGCUucGCCGaGGCCCUGGCCGCc -3'
miRNA:   3'- -UGGuaCGAu-UGGC-CUGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 22744 0.69 0.826789
Target:  5'- gGCCGUaGagaagacCCGGGCCCUGACCaGCa -3'
miRNA:   3'- -UGGUA-Cgauu---GGCCUGGGAUUGG-CGc -5'
28862 3' -55.1 NC_006146.1 + 22958 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 23443 0.68 0.880394
Target:  5'- aGCuCcgGCUGcCCGucucggccuacgaGGCCCUGGCCGUGg -3'
miRNA:   3'- -UG-GuaCGAUuGGC-------------CUGGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 24265 0.67 0.924708
Target:  5'- gACCAUGgacccaGGCCucguGACCCUGGCCGgGg -3'
miRNA:   3'- -UGGUACga----UUGGc---CUGGGAUUGGCgC- -5'
28862 3' -55.1 NC_006146.1 + 26036 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.