miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 54045 0.66 0.935047
Target:  5'- gGCCAUGUcGGCgguggucaGGGCCCaccUGGCCGCc -3'
miRNA:   3'- -UGGUACGaUUGg-------CCUGGG---AUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 61490 0.66 0.939861
Target:  5'- gGCCAaa-----CGGGCCCUGACCGaCGg -3'
miRNA:   3'- -UGGUacgauugGCCUGGGAUUGGC-GC- -5'
28862 3' -55.1 NC_006146.1 + 62723 0.69 0.843293
Target:  5'- gGCCGUGUacaugcccaggaUAGCCGGAgCC---CCGCGg -3'
miRNA:   3'- -UGGUACG------------AUUGGCCUgGGauuGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 67303 0.66 0.939861
Target:  5'- cGCCA-GCUc-CCGGGCCacguCCGCGc -3'
miRNA:   3'- -UGGUaCGAuuGGCCUGGgauuGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 70045 0.68 0.894714
Target:  5'- gGCCGUGCUAuauauaagaGCCucaGACCC-GACCGUc -3'
miRNA:   3'- -UGGUACGAU---------UGGc--CUGGGaUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 70837 0.68 0.892063
Target:  5'- gGCCAaggGCcAAgCGGGCCCggugagggaacacGACCGCGa -3'
miRNA:   3'- -UGGUa--CGaUUgGCCUGGGa------------UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 76881 0.71 0.722247
Target:  5'- gGCCGUGCcccuGCCGGGCCgcaCgugggagccagaggUGACCGCGg -3'
miRNA:   3'- -UGGUACGau--UGGCCUGG---G--------------AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 77002 0.7 0.763901
Target:  5'- uCCGUGCUGGCCcc-CCCU-GCCGCa -3'
miRNA:   3'- uGGUACGAUUGGccuGGGAuUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 91784 0.7 0.79173
Target:  5'- uGCCGUGCUGGCacccgCGGGCCUUAcgaaACCaGCu -3'
miRNA:   3'- -UGGUACGAUUG-----GCCUGGGAU----UGG-CGc -5'
28862 3' -55.1 NC_006146.1 + 102800 0.66 0.948781
Target:  5'- gACCG-GCUGGCCGcccACCUgGAUCGCGc -3'
miRNA:   3'- -UGGUaCGAUUGGCc--UGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 105572 0.67 0.917477
Target:  5'- ----aGgaGGCCGGACCCUcaccauacucgagaGGCCGCa -3'
miRNA:   3'- ugguaCgaUUGGCCUGGGA--------------UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 112869 0.68 0.873957
Target:  5'- gACUAUGCgcucguaGGCCGGGCUCUG--CGCGa -3'
miRNA:   3'- -UGGUACGa------UUGGCCUGGGAUugGCGC- -5'
28862 3' -55.1 NC_006146.1 + 113657 0.74 0.5532
Target:  5'- gGCCuUGCUGACCacGGGCCCguggaccACCGUGg -3'
miRNA:   3'- -UGGuACGAUUGG--CCUGGGau-----UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 113691 0.66 0.935047
Target:  5'- gGCCcgGCcu-CCGG-CCCgggGACgGCGg -3'
miRNA:   3'- -UGGuaCGauuGGCCuGGGa--UUGgCGC- -5'
28862 3' -55.1 NC_006146.1 + 115365 0.73 0.624132
Target:  5'- gGCCGgcgugGCggcggAGCUGGagGCCCUGGCCGCu -3'
miRNA:   3'- -UGGUa----CGa----UUGGCC--UGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 117413 0.67 0.901181
Target:  5'- aGCCAgaccGCacccCCGG-CCCUGACCGaCGa -3'
miRNA:   3'- -UGGUa---CGauu-GGCCuGGGAUUGGC-GC- -5'
28862 3' -55.1 NC_006146.1 + 121143 0.69 0.835133
Target:  5'- aGCCG-GCgu-CUGGGCCUgGGCCGCGc -3'
miRNA:   3'- -UGGUaCGauuGGCCUGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 121345 0.66 0.952893
Target:  5'- gGCCAUGCUGggccugGCCGGcgugGCCU---CCGCc -3'
miRNA:   3'- -UGGUACGAU------UGGCC----UGGGauuGGCGc -5'
28862 3' -55.1 NC_006146.1 + 122391 0.71 0.744751
Target:  5'- gGCCAggaacgcggaggUGCUGgagacccucACgCGGAUCCUGGCCGCc -3'
miRNA:   3'- -UGGU------------ACGAU---------UG-GCCUGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 123248 0.66 0.948781
Target:  5'- gGCCGccGC--GCUGGGCCg-GGCCGCGg -3'
miRNA:   3'- -UGGUa-CGauUGGCCUGGgaUUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.