Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28862 | 3' | -55.1 | NC_006146.1 | + | 123384 | 0.66 | 0.929997 |
Target: 5'- gGCCccGCaaccUGGCUGGAa-CUGGCCGCGg -3' miRNA: 3'- -UGGuaCG----AUUGGCCUggGAUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 124324 | 0.68 | 0.881098 |
Target: 5'- gGCCAUGaCgcuGCUGGcgcacgccACCCUGAUCGCc -3' miRNA: 3'- -UGGUAC-Gau-UGGCC--------UGGGAUUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 126795 | 0.7 | 0.80958 |
Target: 5'- cGCCggGC-AGCCGGGgCCUGGagguuuCCGCGg -3' miRNA: 3'- -UGGuaCGaUUGGCCUgGGAUU------GGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 126864 | 0.66 | 0.939861 |
Target: 5'- -aCAUcGCUAaaaaaGCgGGGCCCUcGGCCGCc -3' miRNA: 3'- ugGUA-CGAU-----UGgCCUGGGA-UUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 127569 | 0.68 | 0.859033 |
Target: 5'- cGCC-UGCUGGCCcugggcGGCCgaGGCCGCGc -3' miRNA: 3'- -UGGuACGAUUGGc-----CUGGgaUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 127619 | 0.66 | 0.939861 |
Target: 5'- cGCUagGCaccuGCCGGACCUccaGGCCGCc -3' miRNA: 3'- -UGGuaCGau--UGGCCUGGGa--UUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 127987 | 0.66 | 0.929479 |
Target: 5'- cGCCGcUGCUGacaGCCGGgacagacgGCCCUAGcgucggcCCGCa -3' miRNA: 3'- -UGGU-ACGAU---UGGCC--------UGGGAUU-------GGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 128464 | 0.7 | 0.773306 |
Target: 5'- cGCCAUGCUGGCgGcGcgcACCC-AGCUGCGu -3' miRNA: 3'- -UGGUACGAUUGgC-C---UGGGaUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 129605 | 0.66 | 0.951683 |
Target: 5'- cGCCAUGCcuccgccgucuccgUcGCCGGGUCCU--CCGCGg -3' miRNA: 3'- -UGGUACG--------------AuUGGCCUGGGAuuGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 132746 | 0.66 | 0.929997 |
Target: 5'- cCCcgGUUcuCCGGGgCCggauGCCGCGg -3' miRNA: 3'- uGGuaCGAuuGGCCUgGGau--UGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 136760 | 0.67 | 0.919181 |
Target: 5'- cGCCGggGCU--CCGGgagGCCC-GGCCGCGa -3' miRNA: 3'- -UGGUa-CGAuuGGCC---UGGGaUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 136946 | 0.67 | 0.924708 |
Target: 5'- gACCAcGCccacccgGACCagcGGACCCagcgGACCGCa -3' miRNA: 3'- -UGGUaCGa------UUGG---CCUGGGa---UUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 138006 | 0.66 | 0.939861 |
Target: 5'- --gGUGCgcccccAGCCGGACCCUGguGCCagGCa -3' miRNA: 3'- uggUACGa-----UUGGCCUGGGAU--UGG--CGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 142392 | 0.68 | 0.888018 |
Target: 5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3' miRNA: 3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 142778 | 0.66 | 0.948781 |
Target: 5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3' miRNA: 3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 144759 | 0.68 | 0.859033 |
Target: 5'- cCCGUGCUcuuuccGACCGGGCCCcgguGCCu-- -3' miRNA: 3'- uGGUACGA------UUGGCCUGGGau--UGGcgc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 145470 | 0.68 | 0.888018 |
Target: 5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3' miRNA: 3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 145856 | 0.66 | 0.948781 |
Target: 5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3' miRNA: 3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 146836 | 0.69 | 0.843293 |
Target: 5'- cGCCA-GCguagAGcCCGGGCCUggcucggGGCCGCGu -3' miRNA: 3'- -UGGUaCGa---UU-GGCCUGGGa------UUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 148548 | 0.68 | 0.888018 |
Target: 5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3' miRNA: 3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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