miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 165807 0.7 0.80958
Target:  5'- gGCCG-GCUAGggGGGcguCCCUGGCCGCGu -3'
miRNA:   3'- -UGGUaCGAUUggCCU---GGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 159219 0.67 0.913417
Target:  5'- --aGUGUUAGuuGGGCCUacuUGGCCGCa -3'
miRNA:   3'- uggUACGAUUggCCUGGG---AUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 158470 0.71 0.756293
Target:  5'- gGCCAUGCUGuucauaaACUGGACCaccucggcguccaccGCCGCGu -3'
miRNA:   3'- -UGGUACGAU-------UGGCCUGGgau------------UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 158169 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 157781 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 156063 0.67 0.924708
Target:  5'- gGCCucccGCggccCCGGGCCCgaGACCGUGc -3'
miRNA:   3'- -UGGua--CGauu-GGCCUGGGa-UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 155090 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 154703 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 152242 0.68 0.894714
Target:  5'- cGCC-UGCgaaGGCCGGGcaugcgauCCCUGGCUGCc -3'
miRNA:   3'- -UGGuACGa--UUGGCCU--------GGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 152012 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 151626 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 148934 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 148548 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 146836 0.69 0.843293
Target:  5'- cGCCA-GCguagAGcCCGGGCCUggcucggGGCCGCGu -3'
miRNA:   3'- -UGGUaCGa---UU-GGCCUGGGa------UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 145856 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 145470 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 144759 0.68 0.859033
Target:  5'- cCCGUGCUcuuuccGACCGGGCCCcgguGCCu-- -3'
miRNA:   3'- uGGUACGA------UUGGCCUGGGau--UGGcgc -5'
28862 3' -55.1 NC_006146.1 + 142778 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 142392 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 138006 0.66 0.939861
Target:  5'- --gGUGCgcccccAGCCGGACCCUGguGCCagGCa -3'
miRNA:   3'- uggUACGa-----UUGGCCUGGGAU--UGG--CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.