miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 136946 0.67 0.924708
Target:  5'- gACCAcGCccacccgGACCagcGGACCCagcgGACCGCa -3'
miRNA:   3'- -UGGUaCGa------UUGG---CCUGGGa---UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 136760 0.67 0.919181
Target:  5'- cGCCGggGCU--CCGGgagGCCC-GGCCGCGa -3'
miRNA:   3'- -UGGUa-CGAuuGGCC---UGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 132746 0.66 0.929997
Target:  5'- cCCcgGUUcuCCGGGgCCggauGCCGCGg -3'
miRNA:   3'- uGGuaCGAuuGGCCUgGGau--UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 129605 0.66 0.951683
Target:  5'- cGCCAUGCcuccgccgucuccgUcGCCGGGUCCU--CCGCGg -3'
miRNA:   3'- -UGGUACG--------------AuUGGCCUGGGAuuGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 128464 0.7 0.773306
Target:  5'- cGCCAUGCUGGCgGcGcgcACCC-AGCUGCGu -3'
miRNA:   3'- -UGGUACGAUUGgC-C---UGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 127987 0.66 0.929479
Target:  5'- cGCCGcUGCUGacaGCCGGgacagacgGCCCUAGcgucggcCCGCa -3'
miRNA:   3'- -UGGU-ACGAU---UGGCC--------UGGGAUU-------GGCGc -5'
28862 3' -55.1 NC_006146.1 + 127619 0.66 0.939861
Target:  5'- cGCUagGCaccuGCCGGACCUccaGGCCGCc -3'
miRNA:   3'- -UGGuaCGau--UGGCCUGGGa--UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 127569 0.68 0.859033
Target:  5'- cGCC-UGCUGGCCcugggcGGCCgaGGCCGCGc -3'
miRNA:   3'- -UGGuACGAUUGGc-----CUGGgaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 126864 0.66 0.939861
Target:  5'- -aCAUcGCUAaaaaaGCgGGGCCCUcGGCCGCc -3'
miRNA:   3'- ugGUA-CGAU-----UGgCCUGGGA-UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 126795 0.7 0.80958
Target:  5'- cGCCggGC-AGCCGGGgCCUGGagguuuCCGCGg -3'
miRNA:   3'- -UGGuaCGaUUGGCCUgGGAUU------GGCGC- -5'
28862 3' -55.1 NC_006146.1 + 124324 0.68 0.881098
Target:  5'- gGCCAUGaCgcuGCUGGcgcacgccACCCUGAUCGCc -3'
miRNA:   3'- -UGGUAC-Gau-UGGCC--------UGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 123384 0.66 0.929997
Target:  5'- gGCCccGCaaccUGGCUGGAa-CUGGCCGCGg -3'
miRNA:   3'- -UGGuaCG----AUUGGCCUggGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 123248 0.66 0.948781
Target:  5'- gGCCGccGC--GCUGGGCCg-GGCCGCGg -3'
miRNA:   3'- -UGGUa-CGauUGGCCUGGgaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 122391 0.71 0.744751
Target:  5'- gGCCAggaacgcggaggUGCUGgagacccucACgCGGAUCCUGGCCGCc -3'
miRNA:   3'- -UGGU------------ACGAU---------UG-GCCUGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 121345 0.66 0.952893
Target:  5'- gGCCAUGCUGggccugGCCGGcgugGCCU---CCGCc -3'
miRNA:   3'- -UGGUACGAU------UGGCC----UGGGauuGGCGc -5'
28862 3' -55.1 NC_006146.1 + 121143 0.69 0.835133
Target:  5'- aGCCG-GCgu-CUGGGCCUgGGCCGCGc -3'
miRNA:   3'- -UGGUaCGauuGGCCUGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 117413 0.67 0.901181
Target:  5'- aGCCAgaccGCacccCCGG-CCCUGACCGaCGa -3'
miRNA:   3'- -UGGUa---CGauu-GGCCuGGGAUUGGC-GC- -5'
28862 3' -55.1 NC_006146.1 + 115365 0.73 0.624132
Target:  5'- gGCCGgcgugGCggcggAGCUGGagGCCCUGGCCGCu -3'
miRNA:   3'- -UGGUa----CGa----UUGGCC--UGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 113691 0.66 0.935047
Target:  5'- gGCCcgGCcu-CCGG-CCCgggGACgGCGg -3'
miRNA:   3'- -UGGuaCGauuGGCCuGGGa--UUGgCGC- -5'
28862 3' -55.1 NC_006146.1 + 113657 0.74 0.5532
Target:  5'- gGCCuUGCUGACCacGGGCCCguggaccACCGUGg -3'
miRNA:   3'- -UGGuACGAUUGG--CCUGGGau-----UGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.