Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28862 | 3' | -55.1 | NC_006146.1 | + | 112869 | 0.68 | 0.873957 |
Target: 5'- gACUAUGCgcucguaGGCCGGGCUCUG--CGCGa -3' miRNA: 3'- -UGGUACGa------UUGGCCUGGGAUugGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 105572 | 0.67 | 0.917477 |
Target: 5'- ----aGgaGGCCGGACCCUcaccauacucgagaGGCCGCa -3' miRNA: 3'- ugguaCgaUUGGCCUGGGA--------------UUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 102800 | 0.66 | 0.948781 |
Target: 5'- gACCG-GCUGGCCGcccACCUgGAUCGCGc -3' miRNA: 3'- -UGGUaCGAUUGGCc--UGGGaUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 91784 | 0.7 | 0.79173 |
Target: 5'- uGCCGUGCUGGCacccgCGGGCCUUAcgaaACCaGCu -3' miRNA: 3'- -UGGUACGAUUG-----GCCUGGGAU----UGG-CGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 77002 | 0.7 | 0.763901 |
Target: 5'- uCCGUGCUGGCCcc-CCCU-GCCGCa -3' miRNA: 3'- uGGUACGAUUGGccuGGGAuUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 76881 | 0.71 | 0.722247 |
Target: 5'- gGCCGUGCcccuGCCGGGCCgcaCgugggagccagaggUGACCGCGg -3' miRNA: 3'- -UGGUACGau--UGGCCUGG---G--------------AUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 70837 | 0.68 | 0.892063 |
Target: 5'- gGCCAaggGCcAAgCGGGCCCggugagggaacacGACCGCGa -3' miRNA: 3'- -UGGUa--CGaUUgGCCUGGGa------------UUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 70045 | 0.68 | 0.894714 |
Target: 5'- gGCCGUGCUAuauauaagaGCCucaGACCC-GACCGUc -3' miRNA: 3'- -UGGUACGAU---------UGGc--CUGGGaUUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 67303 | 0.66 | 0.939861 |
Target: 5'- cGCCA-GCUc-CCGGGCCacguCCGCGc -3' miRNA: 3'- -UGGUaCGAuuGGCCUGGgauuGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 62723 | 0.69 | 0.843293 |
Target: 5'- gGCCGUGUacaugcccaggaUAGCCGGAgCC---CCGCGg -3' miRNA: 3'- -UGGUACG------------AUUGGCCUgGGauuGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 61490 | 0.66 | 0.939861 |
Target: 5'- gGCCAaa-----CGGGCCCUGACCGaCGg -3' miRNA: 3'- -UGGUacgauugGCCUGGGAUUGGC-GC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 54045 | 0.66 | 0.935047 |
Target: 5'- gGCCAUGUcGGCgguggucaGGGCCCaccUGGCCGCc -3' miRNA: 3'- -UGGUACGaUUGg-------CCUGGG---AUUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 52975 | 0.66 | 0.92791 |
Target: 5'- gGCCgguaGUGCgcaggcggaccuGCCGG-CCgUGGCCGCGg -3' miRNA: 3'- -UGG----UACGau----------UGGCCuGGgAUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 48679 | 0.71 | 0.744751 |
Target: 5'- cCCAUGCUucGCCGGccuCCCUcgcccGCCGCu -3' miRNA: 3'- uGGUACGAu-UGGCCu--GGGAu----UGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 47866 | 0.67 | 0.907416 |
Target: 5'- uCCA-GCgc-CCGGACCUgGGCCGCc -3' miRNA: 3'- uGGUaCGauuGGCCUGGGaUUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 46126 | 0.77 | 0.412083 |
Target: 5'- -gCAUGC---CCGGGCCCUGGCCGUGc -3' miRNA: 3'- ugGUACGauuGGCCUGGGAUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 45673 | 0.67 | 0.919181 |
Target: 5'- gGCCAgugGCUccccuggauuGCUGGAUCCUgcacGACCGCc -3' miRNA: 3'- -UGGUa--CGAu---------UGGCCUGGGA----UUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 44978 | 0.68 | 0.8666 |
Target: 5'- gACCGcGgUGGCCGGACCCUucucuCCaGCu -3' miRNA: 3'- -UGGUaCgAUUGGCCUGGGAuu---GG-CGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 44712 | 0.72 | 0.662916 |
Target: 5'- gGCCGUggcccccGCUGGCCGG-CCUgaugcggUGGCCGCGg -3' miRNA: 3'- -UGGUA-------CGAUUGGCCuGGG-------AUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 42471 | 0.66 | 0.929997 |
Target: 5'- cGCCcgGuCUGcggcCCGGAucacccucCCCUGGCCGUGu -3' miRNA: 3'- -UGGuaC-GAUu---GGCCU--------GGGAUUGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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