miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 42060 0.69 0.851262
Target:  5'- cCUGUGcCUGGCCGGGCuuaccugcuCCUgGACCGCGc -3'
miRNA:   3'- uGGUAC-GAUUGGCCUG---------GGA-UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 41884 0.7 0.763901
Target:  5'- cGCCGUGCc--CCGGACCUgagUCGCGu -3'
miRNA:   3'- -UGGUACGauuGGCCUGGGauuGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 41734 0.71 0.722247
Target:  5'- uACC-UGCUcuACCGGGCCCUGAgacgggugggcuucCCGCc -3'
miRNA:   3'- -UGGuACGAu-UGGCCUGGGAUU--------------GGCGc -5'
28862 3' -55.1 NC_006146.1 + 39439 0.68 0.883892
Target:  5'- cACCuggGUgcACUGGGCCCUGcuccucauaacuuguGCCGUGg -3'
miRNA:   3'- -UGGua-CGauUGGCCUGGGAU---------------UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 39428 0.66 0.935047
Target:  5'- ----aGUUGGCCGGGgCCUGGCCcGUGa -3'
miRNA:   3'- ugguaCGAUUGGCCUgGGAUUGG-CGC- -5'
28862 3' -55.1 NC_006146.1 + 39230 1.09 0.004109
Target:  5'- uACCAUGCUAACCGGACCCUAACCGCGa -3'
miRNA:   3'- -UGGUACGAUUGGCCUGGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 38140 0.68 0.894714
Target:  5'- gACCGUGCggGACCGcggcauccGGCCCcggagAACCGgGg -3'
miRNA:   3'- -UGGUACGa-UUGGC--------CUGGGa----UUGGCgC- -5'
28862 3' -55.1 NC_006146.1 + 34176 0.66 0.939861
Target:  5'- --gGUGCgcccccAGCCGGACCCUGguGCCagGCa -3'
miRNA:   3'- uggUACGa-----UUGGCCUGGGAU--UGG--CGc -5'
28862 3' -55.1 NC_006146.1 + 33543 0.66 0.94172
Target:  5'- uGCCcgGCUuGCCuGGCCCUggugcuccuccggggGucGCCGCGu -3'
miRNA:   3'- -UGGuaCGAuUGGcCUGGGA---------------U--UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 33119 0.66 0.939861
Target:  5'- cGCCGgcggGUUcGCCGGGCCgCUGccCCGCu -3'
miRNA:   3'- -UGGUa---CGAuUGGCCUGG-GAUu-GGCGc -5'
28862 3' -55.1 NC_006146.1 + 30225 0.76 0.455886
Target:  5'- cGCCggGCUGGCCGGAuaCCCcggaaauUGGCCGCa -3'
miRNA:   3'- -UGGuaCGAUUGGCCU--GGG-------AUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 29114 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 26036 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 24265 0.67 0.924708
Target:  5'- gACCAUGgacccaGGCCucguGACCCUGGCCGgGg -3'
miRNA:   3'- -UGGUACga----UUGGc---CUGGGAUUGGCgC- -5'
28862 3' -55.1 NC_006146.1 + 23443 0.68 0.880394
Target:  5'- aGCuCcgGCUGcCCGucucggccuacgaGGCCCUGGCCGUGg -3'
miRNA:   3'- -UG-GuaCGAUuGGC-------------CUGGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 22958 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 22744 0.69 0.826789
Target:  5'- gGCCGUaGagaagacCCGGGCCCUGACCaGCa -3'
miRNA:   3'- -UGGUA-Cgauu---GGCCUGGGAUUGG-CGc -5'
28862 3' -55.1 NC_006146.1 + 21057 0.74 0.543231
Target:  5'- cGCUgcGCUucGCCGaGGCCCUGGCCGCc -3'
miRNA:   3'- -UGGuaCGAu-UGGC-CUGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 19881 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 18897 0.69 0.851262
Target:  5'- cACUGUGCUucuACCGaGAcaCCCUGACgGUGg -3'
miRNA:   3'- -UGGUACGAu--UGGC-CU--GGGAUUGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.