miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 46126 0.77 0.412083
Target:  5'- -gCAUGC---CCGGGCCCUGGCCGUGc -3'
miRNA:   3'- ugGUACGauuGGCCUGGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 156063 0.67 0.924708
Target:  5'- gGCCucccGCggccCCGGGCCCgaGACCGUGc -3'
miRNA:   3'- -UGGua--CGauu-GGCCUGGGa-UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 132746 0.66 0.929997
Target:  5'- cCCcgGUUcuCCGGGgCCggauGCCGCGg -3'
miRNA:   3'- uGGuaCGAuuGGCCUgGGau--UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 5116 0.66 0.948781
Target:  5'- gGCCGUGCc-ACCGuGGCUCUgauuGAUCGCu -3'
miRNA:   3'- -UGGUACGauUGGC-CUGGGA----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 158470 0.71 0.756293
Target:  5'- gGCCAUGCUGuucauaaACUGGACCaccucggcguccaccGCCGCGu -3'
miRNA:   3'- -UGGUACGAU-------UGGCCUGGgau------------UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 4904 0.7 0.763901
Target:  5'- cGCCugGUGacagAGCCGGACCCUcgcugucggguGGCCGUGc -3'
miRNA:   3'- -UGG--UACga--UUGGCCUGGGA-----------UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 126795 0.7 0.80958
Target:  5'- cGCCggGC-AGCCGGGgCCUGGagguuuCCGCGg -3'
miRNA:   3'- -UGGuaCGaUUGGCCUgGGAUU------GGCGC- -5'
28862 3' -55.1 NC_006146.1 + 3840 0.69 0.826789
Target:  5'- cCCccGCUGcccuACCGGACCUggGAUCGCa -3'
miRNA:   3'- uGGuaCGAU----UGGCCUGGGa-UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 144759 0.68 0.859033
Target:  5'- cCCGUGCUcuuuccGACCGGGCCCcgguGCCu-- -3'
miRNA:   3'- uGGUACGA------UUGGCCUGGGau--UGGcgc -5'
28862 3' -55.1 NC_006146.1 + 47866 0.67 0.907416
Target:  5'- uCCA-GCgc-CCGGACCUgGGCCGCc -3'
miRNA:   3'- uGGUaCGauuGGCCUGGGaUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 70837 0.68 0.892063
Target:  5'- gGCCAaggGCcAAgCGGGCCCggugagggaacacGACCGCGa -3'
miRNA:   3'- -UGGUa--CGaUUgGCCUGGGa------------UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 146836 0.69 0.843293
Target:  5'- cGCCA-GCguagAGcCCGGGCCUggcucggGGCCGCGu -3'
miRNA:   3'- -UGGUaCGa---UU-GGCCUGGGa------UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 30225 0.76 0.455886
Target:  5'- cGCCggGCUGGCCGGAuaCCCcggaaauUGGCCGCa -3'
miRNA:   3'- -UGGuaCGAUUGGCCU--GGG-------AUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 70045 0.68 0.894714
Target:  5'- gGCCGUGCUAuauauaagaGCCucaGACCC-GACCGUc -3'
miRNA:   3'- -UGGUACGAU---------UGGc--CUGGGaUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 44712 0.72 0.662916
Target:  5'- gGCCGUggcccccGCUGGCCGG-CCUgaugcggUGGCCGCGg -3'
miRNA:   3'- -UGGUA-------CGAUUGGCCuGGG-------AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 121143 0.69 0.835133
Target:  5'- aGCCG-GCgu-CUGGGCCUgGGCCGCGc -3'
miRNA:   3'- -UGGUaCGauuGGCCUGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 152242 0.68 0.894714
Target:  5'- cGCC-UGCgaaGGCCGGGcaugcgauCCCUGGCUGCc -3'
miRNA:   3'- -UGGuACGa--UUGGCCU--------GGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 42471 0.66 0.929997
Target:  5'- cGCCcgGuCUGcggcCCGGAucacccucCCCUGGCCGUGu -3'
miRNA:   3'- -UGGuaC-GAUu---GGCCU--------GGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 48679 0.71 0.744751
Target:  5'- cCCAUGCUucGCCGGccuCCCUcgcccGCCGCu -3'
miRNA:   3'- uGGUACGAu-UGGCCu--GGGAu----UGGCGc -5'
28862 3' -55.1 NC_006146.1 + 128464 0.7 0.773306
Target:  5'- cGCCAUGCUGGCgGcGcgcACCC-AGCUGCGu -3'
miRNA:   3'- -UGGUACGAUUGgC-C---UGGGaUUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.