miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 146836 0.69 0.843293
Target:  5'- cGCCA-GCguagAGcCCGGGCCUggcucggGGCCGCGu -3'
miRNA:   3'- -UGGUaCGa---UU-GGCCUGGGa------UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 48679 0.71 0.744751
Target:  5'- cCCAUGCUucGCCGGccuCCCUcgcccGCCGCu -3'
miRNA:   3'- uGGUACGAu-UGGCCu--GGGAu----UGGCGc -5'
28862 3' -55.1 NC_006146.1 + 29114 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 127619 0.66 0.939861
Target:  5'- cGCUagGCaccuGCCGGACCUccaGGCCGCc -3'
miRNA:   3'- -UGGuaCGau--UGGCCUGGGa--UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 156063 0.67 0.924708
Target:  5'- gGCCucccGCggccCCGGGCCCgaGACCGUGc -3'
miRNA:   3'- -UGGua--CGauu-GGCCUGGGa-UUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 44712 0.72 0.662916
Target:  5'- gGCCGUggcccccGCUGGCCGG-CCUgaugcggUGGCCGCGg -3'
miRNA:   3'- -UGGUA-------CGAUUGGCCuGGG-------AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 67303 0.66 0.939861
Target:  5'- cGCCA-GCUc-CCGGGCCacguCCGCGc -3'
miRNA:   3'- -UGGUaCGAuuGGCCUGGgauuGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 30225 0.76 0.455886
Target:  5'- cGCCggGCUGGCCGGAuaCCCcggaaauUGGCCGCa -3'
miRNA:   3'- -UGGuaCGAUUGGCCU--GGG-------AUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 46126 0.77 0.412083
Target:  5'- -gCAUGC---CCGGGCCCUGGCCGUGc -3'
miRNA:   3'- ugGUACGauuGGCCUGGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 42471 0.66 0.929997
Target:  5'- cGCCcgGuCUGcggcCCGGAucacccucCCCUGGCCGUGu -3'
miRNA:   3'- -UGGuaC-GAUu---GGCCU--------GGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 19881 0.66 0.943991
Target:  5'- cACCAgGCcGGCCGGagggaccccggcaGCCCgggagAGCCGCc -3'
miRNA:   3'- -UGGUaCGaUUGGCC-------------UGGGa----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 126795 0.7 0.80958
Target:  5'- cGCCggGC-AGCCGGGgCCUGGagguuuCCGCGg -3'
miRNA:   3'- -UGGuaCGaUUGGCCUgGGAUU------GGCGC- -5'
28862 3' -55.1 NC_006146.1 + 158470 0.71 0.756293
Target:  5'- gGCCAUGCUGuucauaaACUGGACCaccucggcguccaccGCCGCGu -3'
miRNA:   3'- -UGGUACGAU-------UGGCCUGGgau------------UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 34176 0.66 0.939861
Target:  5'- --gGUGCgcccccAGCCGGACCCUGguGCCagGCa -3'
miRNA:   3'- uggUACGa-----UUGGCCUGGGAU--UGG--CGc -5'
28862 3' -55.1 NC_006146.1 + 33543 0.66 0.94172
Target:  5'- uGCCcgGCUuGCCuGGCCCUggugcuccuccggggGucGCCGCGu -3'
miRNA:   3'- -UGGuaCGAuUGGcCUGGGA---------------U--UGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 5116 0.66 0.948781
Target:  5'- gGCCGUGCc-ACCGuGGCUCUgauuGAUCGCu -3'
miRNA:   3'- -UGGUACGauUGGC-CUGGGA----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 127987 0.66 0.929479
Target:  5'- cGCCGcUGCUGacaGCCGGgacagacgGCCCUAGcgucggcCCGCa -3'
miRNA:   3'- -UGGU-ACGAU---UGGCC--------UGGGAUU-------GGCGc -5'
28862 3' -55.1 NC_006146.1 + 145470 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 151626 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 148548 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.