miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 41734 0.71 0.722247
Target:  5'- uACC-UGCUcuACCGGGCCCUGAgacgggugggcuucCCGCc -3'
miRNA:   3'- -UGGuACGAu-UGGCCUGGGAUU--------------GGCGc -5'
28862 3' -55.1 NC_006146.1 + 76881 0.71 0.722247
Target:  5'- gGCCGUGCcccuGCCGGGCCgcaCgugggagccagaggUGACCGCGg -3'
miRNA:   3'- -UGGUACGau--UGGCCUGG---G--------------AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 122391 0.71 0.744751
Target:  5'- gGCCAggaacgcggaggUGCUGgagacccucACgCGGAUCCUGGCCGCc -3'
miRNA:   3'- -UGGU------------ACGAU---------UG-GCCUGGGAUUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 77002 0.7 0.763901
Target:  5'- uCCGUGCUGGCCcc-CCCU-GCCGCa -3'
miRNA:   3'- uGGUACGAUUGGccuGGGAuUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 12072 0.77 0.420811
Target:  5'- cGCUuUGCgagGGCCGGGCCCcGGCCGUGu -3'
miRNA:   3'- -UGGuACGa--UUGGCCUGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 39230 1.09 0.004109
Target:  5'- uACCAUGCUAACCGGACCCUAACCGCGa -3'
miRNA:   3'- -UGGUACGAUUGGCCUGGGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 117413 0.67 0.901181
Target:  5'- aGCCAgaccGCacccCCGG-CCCUGACCGaCGa -3'
miRNA:   3'- -UGGUa---CGauu-GGCCuGGGAUUGGC-GC- -5'
28862 3' -55.1 NC_006146.1 + 152012 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 148934 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 126864 0.66 0.939861
Target:  5'- -aCAUcGCUAaaaaaGCgGGGCCCUcGGCCGCc -3'
miRNA:   3'- ugGUA-CGAU-----UGgCCUGGGA-UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 17199 0.66 0.939861
Target:  5'- gACCAUGCacgAGaaguaCGaGGCCCUccagGACCGCu -3'
miRNA:   3'- -UGGUACGa--UUg----GC-CUGGGA----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 123384 0.66 0.929997
Target:  5'- gGCCccGCaaccUGGCUGGAa-CUGGCCGCGg -3'
miRNA:   3'- -UGGuaCG----AUUGGCCUggGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 127987 0.66 0.929479
Target:  5'- cGCCGcUGCUGacaGCCGGgacagacgGCCCUAGcgucggcCCGCa -3'
miRNA:   3'- -UGGU-ACGAU---UGGCC--------UGGGAUU-------GGCGc -5'
28862 3' -55.1 NC_006146.1 + 38140 0.68 0.894714
Target:  5'- gACCGUGCggGACCGcggcauccGGCCCcggagAACCGgGg -3'
miRNA:   3'- -UGGUACGa-UUGGC--------CUGGGa----UUGGCgC- -5'
28862 3' -55.1 NC_006146.1 + 157781 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 154703 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 151626 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 148548 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 145470 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5'
28862 3' -55.1 NC_006146.1 + 142392 0.68 0.888018
Target:  5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3'
miRNA:   3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.