miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 3' -55.1 NC_006146.1 + 45673 0.67 0.919181
Target:  5'- gGCCAgugGCUccccuggauuGCUGGAUCCUgcacGACCGCc -3'
miRNA:   3'- -UGGUa--CGAu---------UGGCCUGGGA----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 136760 0.67 0.919181
Target:  5'- cGCCGggGCU--CCGGgagGCCC-GGCCGCGa -3'
miRNA:   3'- -UGGUa-CGAuuGGCC---UGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 142778 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 145856 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 148934 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 152012 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 155090 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 158169 0.66 0.948781
Target:  5'- gGCCucuggGCUGgucucgcuuGCUGGcCCCaaUGGCCGCGg -3'
miRNA:   3'- -UGGua---CGAU---------UGGCCuGGG--AUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 123248 0.66 0.948781
Target:  5'- gGCCGccGC--GCUGGGCCg-GGCCGCGg -3'
miRNA:   3'- -UGGUa-CGauUGGCCUGGgaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 129605 0.66 0.951683
Target:  5'- cGCCAUGCcuccgccgucuccgUcGCCGGGUCCU--CCGCGg -3'
miRNA:   3'- -UGGUACG--------------AuUGGCCUGGGAuuGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 102800 0.66 0.948781
Target:  5'- gACCG-GCUGGCCGcccACCUgGAUCGCGc -3'
miRNA:   3'- -UGGUaCGAUUGGCc--UGGGaUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 61490 0.66 0.939861
Target:  5'- gGCCAaa-----CGGGCCCUGACCGaCGg -3'
miRNA:   3'- -UGGUacgauugGCCUGGGAUUGGC-GC- -5'
28862 3' -55.1 NC_006146.1 + 24265 0.67 0.924708
Target:  5'- gACCAUGgacccaGGCCucguGACCCUGGCCGgGg -3'
miRNA:   3'- -UGGUACga----UUGGc---CUGGGAUUGGCgC- -5'
28862 3' -55.1 NC_006146.1 + 15908 0.67 0.924708
Target:  5'- aGCCAgcaacuucUGU--GCCGGGCCCUG--CGCGa -3'
miRNA:   3'- -UGGU--------ACGauUGGCCUGGGAUugGCGC- -5'
28862 3' -55.1 NC_006146.1 + 136946 0.67 0.924708
Target:  5'- gACCAcGCccacccgGACCagcGGACCCagcgGACCGCa -3'
miRNA:   3'- -UGGUaCGa------UUGG---CCUGGGa---UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 52975 0.66 0.92791
Target:  5'- gGCCgguaGUGCgcaggcggaccuGCCGG-CCgUGGCCGCGg -3'
miRNA:   3'- -UGG----UACGau----------UGGCCuGGgAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 127987 0.66 0.929479
Target:  5'- cGCCGcUGCUGacaGCCGGgacagacgGCCCUAGcgucggcCCGCa -3'
miRNA:   3'- -UGGU-ACGAU---UGGCC--------UGGGAUU-------GGCGc -5'
28862 3' -55.1 NC_006146.1 + 123384 0.66 0.929997
Target:  5'- gGCCccGCaaccUGGCUGGAa-CUGGCCGCGg -3'
miRNA:   3'- -UGGuaCG----AUUGGCCUggGAUUGGCGC- -5'
28862 3' -55.1 NC_006146.1 + 17199 0.66 0.939861
Target:  5'- gACCAUGCacgAGaaguaCGaGGCCCUccagGACCGCu -3'
miRNA:   3'- -UGGUACGa--UUg----GC-CUGGGA----UUGGCGc -5'
28862 3' -55.1 NC_006146.1 + 126864 0.66 0.939861
Target:  5'- -aCAUcGCUAaaaaaGCgGGGCCCUcGGCCGCc -3'
miRNA:   3'- ugGUA-CGAU-----UGgCCUGGGA-UUGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.