Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28862 | 3' | -55.1 | NC_006146.1 | + | 121345 | 0.66 | 0.952893 |
Target: 5'- gGCCAUGCUGggccugGCCGGcgugGCCU---CCGCc -3' miRNA: 3'- -UGGUACGAU------UGGCC----UGGGauuGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 17199 | 0.66 | 0.939861 |
Target: 5'- gACCAUGCacgAGaaguaCGaGGCCCUccagGACCGCu -3' miRNA: 3'- -UGGUACGa--UUg----GC-CUGGGA----UUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 123384 | 0.66 | 0.929997 |
Target: 5'- gGCCccGCaaccUGGCUGGAa-CUGGCCGCGg -3' miRNA: 3'- -UGGuaCG----AUUGGCCUggGAUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 127987 | 0.66 | 0.929479 |
Target: 5'- cGCCGcUGCUGacaGCCGGgacagacgGCCCUAGcgucggcCCGCa -3' miRNA: 3'- -UGGU-ACGAU---UGGCC--------UGGGAUU-------GGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 154703 | 0.68 | 0.888018 |
Target: 5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3' miRNA: 3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 157781 | 0.68 | 0.888018 |
Target: 5'- aGCC-UGCUGccccaggagagGCCGGACCCc-GCCugGCGa -3' miRNA: 3'- -UGGuACGAU-----------UGGCCUGGGauUGG--CGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 38140 | 0.68 | 0.894714 |
Target: 5'- gACCGUGCggGACCGcggcauccGGCCCcggagAACCGgGg -3' miRNA: 3'- -UGGUACGa-UUGGC--------CUGGGa----UUGGCgC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 117413 | 0.67 | 0.901181 |
Target: 5'- aGCCAgaccGCacccCCGG-CCCUGACCGaCGa -3' miRNA: 3'- -UGGUa---CGauu-GGCCuGGGAUUGGC-GC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 159219 | 0.67 | 0.913417 |
Target: 5'- --aGUGUUAGuuGGGCCUacuUGGCCGCa -3' miRNA: 3'- uggUACGAUUggCCUGGG---AUUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 105572 | 0.67 | 0.917477 |
Target: 5'- ----aGgaGGCCGGACCCUcaccauacucgagaGGCCGCa -3' miRNA: 3'- ugguaCgaUUGGCCUGGGA--------------UUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 45673 | 0.67 | 0.919181 |
Target: 5'- gGCCAgugGCUccccuggauuGCUGGAUCCUgcacGACCGCc -3' miRNA: 3'- -UGGUa--CGAu---------UGGCCUGGGA----UUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 52975 | 0.66 | 0.92791 |
Target: 5'- gGCCgguaGUGCgcaggcggaccuGCCGG-CCgUGGCCGCGg -3' miRNA: 3'- -UGG----UACGau----------UGGCCuGGgAUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 136946 | 0.67 | 0.924708 |
Target: 5'- gACCAcGCccacccgGACCagcGGACCCagcgGACCGCa -3' miRNA: 3'- -UGGUaCGa------UUGG---CCUGGGa---UUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 15908 | 0.67 | 0.924708 |
Target: 5'- aGCCAgcaacuucUGU--GCCGGGCCCUG--CGCGa -3' miRNA: 3'- -UGGU--------ACGauUGGCCUGGGAUugGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 24265 | 0.67 | 0.924708 |
Target: 5'- gACCAUGgacccaGGCCucguGACCCUGGCCGgGg -3' miRNA: 3'- -UGGUACga----UUGGc---CUGGGAUUGGCgC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 136760 | 0.67 | 0.919181 |
Target: 5'- cGCCGggGCU--CCGGgagGCCC-GGCCGCGa -3' miRNA: 3'- -UGGUa-CGAuuGGCC---UGGGaUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 5116 | 0.66 | 0.948781 |
Target: 5'- gGCCGUGCc-ACCGuGGCUCUgauuGAUCGCu -3' miRNA: 3'- -UGGUACGauUGGC-CUGGGA----UUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 30225 | 0.76 | 0.455886 |
Target: 5'- cGCCggGCUGGCCGGAuaCCCcggaaauUGGCCGCa -3' miRNA: 3'- -UGGuaCGAUUGGCCU--GGG-------AUUGGCGc -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 44712 | 0.72 | 0.662916 |
Target: 5'- gGCCGUggcccccGCUGGCCGG-CCUgaugcggUGGCCGCGg -3' miRNA: 3'- -UGGUA-------CGAUUGGCCuGGG-------AUUGGCGC- -5' |
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28862 | 3' | -55.1 | NC_006146.1 | + | 48679 | 0.71 | 0.744751 |
Target: 5'- cCCAUGCUucGCCGGccuCCCUcgcccGCCGCu -3' miRNA: 3'- uGGUACGAu-UGGCCu--GGGAu----UGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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