miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 5' -53.5 NC_006146.1 + 68548 0.66 0.970035
Target:  5'- cCUUugAGUg--CCCGGaCCGCUGgCGa -3'
miRNA:   3'- -GAGugUCAauaGGGCC-GGUGAUgGUa -5'
28862 5' -53.5 NC_006146.1 + 49767 0.66 0.970035
Target:  5'- gCUCGCGGUaGUCCCGcucgauGCuCGCgUGCCGg -3'
miRNA:   3'- -GAGUGUCAaUAGGGC------CG-GUG-AUGGUa -5'
28862 5' -53.5 NC_006146.1 + 124839 0.66 0.970035
Target:  5'- -aUACAGcu-UCUCGGCCAC-GCCAc -3'
miRNA:   3'- gaGUGUCaauAGGGCCGGUGaUGGUa -5'
28862 5' -53.5 NC_006146.1 + 147159 0.66 0.970035
Target:  5'- --gGCAGUUGaCCCGGCgGCggcgcagACCGg -3'
miRNA:   3'- gagUGUCAAUaGGGCCGgUGa------UGGUa -5'
28862 5' -53.5 NC_006146.1 + 131474 0.66 0.960087
Target:  5'- cCUCACGGgccaggcCCCGGCCAacuuCUGCUu- -3'
miRNA:   3'- -GAGUGUCaaua---GGGCCGGU----GAUGGua -5'
28862 5' -53.5 NC_006146.1 + 44474 0.66 0.956318
Target:  5'- -aCGCAGgaagCgUGGCCugUGCCGUg -3'
miRNA:   3'- gaGUGUCaauaGgGCCGGugAUGGUA- -5'
28862 5' -53.5 NC_006146.1 + 132808 0.67 0.943581
Target:  5'- -aCACuGUc-UCCgGGCCGCUGCCu- -3'
miRNA:   3'- gaGUGuCAauAGGgCCGGUGAUGGua -5'
28862 5' -53.5 NC_006146.1 + 33118 0.67 0.938848
Target:  5'- -cCGCcggcgGGUUcgCCgGGCCGCUGCCc- -3'
miRNA:   3'- gaGUG-----UCAAuaGGgCCGGUGAUGGua -5'
28862 5' -53.5 NC_006146.1 + 106194 0.68 0.928638
Target:  5'- -aCACGG--GUCCCgGGCCucCUGCCAg -3'
miRNA:   3'- gaGUGUCaaUAGGG-CCGGu-GAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 39318 0.68 0.917431
Target:  5'- -cCACAGUaGUCCCcGCCACaagcACCAg -3'
miRNA:   3'- gaGUGUCAaUAGGGcCGGUGa---UGGUa -5'
28862 5' -53.5 NC_006146.1 + 43505 0.68 0.911454
Target:  5'- uUCcCAGUaggGUCCgGGCCagGCUGCCGg -3'
miRNA:   3'- gAGuGUCAa--UAGGgCCGG--UGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 46969 0.69 0.885106
Target:  5'- uUCGCcGg---CCCGGCCGCcGCCAg -3'
miRNA:   3'- gAGUGuCaauaGGGCCGGUGaUGGUa -5'
28862 5' -53.5 NC_006146.1 + 68029 0.69 0.877924
Target:  5'- -aCugGGg---CCCGGCCACgACCAg -3'
miRNA:   3'- gaGugUCaauaGGGCCGGUGaUGGUa -5'
28862 5' -53.5 NC_006146.1 + 4260 0.69 0.862882
Target:  5'- gCUCGCucuGgcGUCCgCGGCCACUcauucugagacuACCAUa -3'
miRNA:   3'- -GAGUGu--CaaUAGG-GCCGGUGA------------UGGUA- -5'
28862 5' -53.5 NC_006146.1 + 122418 0.69 0.862882
Target:  5'- cCUCACGcggAUCCUGGCCGCcaUGCUAUc -3'
miRNA:   3'- -GAGUGUcaaUAGGGCCGGUG--AUGGUA- -5'
28862 5' -53.5 NC_006146.1 + 19718 0.7 0.846971
Target:  5'- -cCACGGgggaggAggCCGGCCGCUACCGc -3'
miRNA:   3'- gaGUGUCaa----UagGGCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 136708 0.7 0.830247
Target:  5'- gCUCcgGCGGggGguggCCGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUag--GGCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 109142 0.7 0.830247
Target:  5'- -gCACAGagGcCUCGGCCGCUGCCu- -3'
miRNA:   3'- gaGUGUCaaUaGGGCCGGUGAUGGua -5'
28862 5' -53.5 NC_006146.1 + 169648 0.71 0.816323
Target:  5'- aCUCAguGUUGUCCCG-CCccagguuuggagaauGCUGCCAc -3'
miRNA:   3'- -GAGUguCAAUAGGGCcGG---------------UGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 135500 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.