Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 4260 | 0.69 | 0.862882 |
Target: 5'- gCUCGCucuGgcGUCCgCGGCCACUcauucugagacuACCAUa -3' miRNA: 3'- -GAGUGu--CaaUAGG-GCCGGUGA------------UGGUA- -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 19718 | 0.7 | 0.846971 |
Target: 5'- -cCACGGgggaggAggCCGGCCGCUACCGc -3' miRNA: 3'- gaGUGUCaa----UagGGCCGGUGAUGGUa -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 33118 | 0.67 | 0.938848 |
Target: 5'- -cCGCcggcgGGUUcgCCgGGCCGCUGCCc- -3' miRNA: 3'- gaGUG-----UCAAuaGGgCCGGUGAUGGua -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 39265 | 1.05 | 0.008687 |
Target: 5'- uCUCACAGUUAUCCCGGCCACUACCAUc -3' miRNA: 3'- -GAGUGUCAAUAGGGCCGGUGAUGGUA- -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 39318 | 0.68 | 0.917431 |
Target: 5'- -cCACAGUaGUCCCcGCCACaagcACCAg -3' miRNA: 3'- gaGUGUCAaUAGGGcCGGUGa---UGGUa -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 43505 | 0.68 | 0.911454 |
Target: 5'- uUCcCAGUaggGUCCgGGCCagGCUGCCGg -3' miRNA: 3'- gAGuGUCAa--UAGGgCCGG--UGAUGGUa -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 44474 | 0.66 | 0.956318 |
Target: 5'- -aCGCAGgaagCgUGGCCugUGCCGUg -3' miRNA: 3'- gaGUGUCaauaGgGCCGGugAUGGUA- -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 46969 | 0.69 | 0.885106 |
Target: 5'- uUCGCcGg---CCCGGCCGCcGCCAg -3' miRNA: 3'- gAGUGuCaauaGGGCCGGUGaUGGUa -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 49767 | 0.66 | 0.970035 |
Target: 5'- gCUCGCGGUaGUCCCGcucgauGCuCGCgUGCCGg -3' miRNA: 3'- -GAGUGUCAaUAGGGC------CG-GUG-AUGGUa -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 68029 | 0.69 | 0.877924 |
Target: 5'- -aCugGGg---CCCGGCCACgACCAg -3' miRNA: 3'- gaGugUCaauaGGGCCGGUGaUGGUa -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 68548 | 0.66 | 0.970035 |
Target: 5'- cCUUugAGUg--CCCGGaCCGCUGgCGa -3' miRNA: 3'- -GAGugUCAauaGGGCC-GGUGAUgGUa -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 106194 | 0.68 | 0.928638 |
Target: 5'- -aCACGG--GUCCCgGGCCucCUGCCAg -3' miRNA: 3'- gaGUGUCaaUAGGG-CCGGu-GAUGGUa -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 109142 | 0.7 | 0.830247 |
Target: 5'- -gCACAGagGcCUCGGCCGCUGCCu- -3' miRNA: 3'- gaGUGUCaaUaGGGCCGGUGAUGGua -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 122418 | 0.69 | 0.862882 |
Target: 5'- cCUCACGcggAUCCUGGCCGCcaUGCUAUc -3' miRNA: 3'- -GAGUGUcaaUAGGGCCGGUG--AUGGUA- -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 124839 | 0.66 | 0.970035 |
Target: 5'- -aUACAGcu-UCUCGGCCAC-GCCAc -3' miRNA: 3'- gaGUGUCaauAGGGCCGGUGaUGGUa -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 131474 | 0.66 | 0.960087 |
Target: 5'- cCUCACGGgccaggcCCCGGCCAacuuCUGCUu- -3' miRNA: 3'- -GAGUGUCaaua---GGGCCGGU----GAUGGua -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 132808 | 0.67 | 0.943581 |
Target: 5'- -aCACuGUc-UCCgGGCCGCUGCCu- -3' miRNA: 3'- gaGUGuCAauAGGgCCGGUGAUGGua -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 135128 | 0.71 | 0.803771 |
Target: 5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3' miRNA: 3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 135221 | 0.71 | 0.803771 |
Target: 5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3' miRNA: 3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5' |
|||||||
28862 | 5' | -53.5 | NC_006146.1 | + | 135314 | 0.71 | 0.803771 |
Target: 5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3' miRNA: 3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home