miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28862 5' -53.5 NC_006146.1 + 136150 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 135314 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 135407 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 135500 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 135593 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 135686 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 135778 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 135871 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 135964 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 135221 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 135128 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 136800 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 136243 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 136893 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 136336 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 136615 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 136986 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 124839 0.66 0.970035
Target:  5'- -aUACAGcu-UCUCGGCCAC-GCCAc -3'
miRNA:   3'- gaGUGUCaauAGGGCCGGUGaUGGUa -5'
28862 5' -53.5 NC_006146.1 + 136429 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5'
28862 5' -53.5 NC_006146.1 + 136522 0.71 0.803771
Target:  5'- gCUCcgGCGGggGguggCCgGGCCGCUGCCGg -3'
miRNA:   3'- -GAG--UGUCaaUa---GGgCCGGUGAUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.