miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28864 3' -45.8 NC_006146.1 + 35873 0.66 0.999923
Target:  5'- uGGugCUuGUGGAgUGgggGUGGUGg -3'
miRNA:   3'- -UCugGAuCACCUaGCa--CACCAC- -5'
28864 3' -45.8 NC_006146.1 + 139659 0.66 0.999909
Target:  5'- gAGGCCUGcaUGGAgcccacggagacugUGUGUGGUGa -3'
miRNA:   3'- -UCUGGAUc-ACCUa-------------GCACACCAC- -5'
28864 3' -45.8 NC_006146.1 + 71160 0.67 0.999866
Target:  5'- gGGACCggcacuGUGGcUUGgGUGGUGg -3'
miRNA:   3'- -UCUGGau----CACCuAGCaCACCAC- -5'
28864 3' -45.8 NC_006146.1 + 133156 0.67 0.999825
Target:  5'- gGGACCUAGUa-AUUGUGcGGUGu -3'
miRNA:   3'- -UCUGGAUCAccUAGCACaCCAC- -5'
28864 3' -45.8 NC_006146.1 + 133637 0.67 0.999772
Target:  5'- gGGACUUGGcUGGGcuUUGaUGUGGUGc -3'
miRNA:   3'- -UCUGGAUC-ACCU--AGC-ACACCAC- -5'
28864 3' -45.8 NC_006146.1 + 19052 0.67 0.999707
Target:  5'- cGGGUCUGG-GGGUC-UGUGGUGg -3'
miRNA:   3'- -UCUGGAUCaCCUAGcACACCAC- -5'
28864 3' -45.8 NC_006146.1 + 12897 0.67 0.999707
Target:  5'- cGGGUCUGG-GGGUC-UGUGGUGg -3'
miRNA:   3'- -UCUGGAUCaCCUAGcACACCAC- -5'
28864 3' -45.8 NC_006146.1 + 15974 0.67 0.999707
Target:  5'- cGGGUCUGG-GGGUC-UGUGGUGg -3'
miRNA:   3'- -UCUGGAUCaCCUAGcACACCAC- -5'
28864 3' -45.8 NC_006146.1 + 28286 0.67 0.999707
Target:  5'- cGGGUCUGG-GGGUC-UGUGGUGg -3'
miRNA:   3'- -UCUGGAUCaCCUAGcACACCAC- -5'
28864 3' -45.8 NC_006146.1 + 25208 0.67 0.999707
Target:  5'- cGGGUCUGG-GGGUC-UGUGGUGg -3'
miRNA:   3'- -UCUGGAUCaCCUAGcACACCAC- -5'
28864 3' -45.8 NC_006146.1 + 22130 0.67 0.999707
Target:  5'- cGGGUCUGG-GGGUC-UGUGGUGg -3'
miRNA:   3'- -UCUGGAUCaCCUAGcACACCAC- -5'
28864 3' -45.8 NC_006146.1 + 18382 0.68 0.999526
Target:  5'- uGGuCCUGGUGGc-CGggGUGGUGa -3'
miRNA:   3'- -UCuGGAUCACCuaGCa-CACCAC- -5'
28864 3' -45.8 NC_006146.1 + 49595 0.68 0.999254
Target:  5'- gGGGCU--GUGGAUgGUGUGGa- -3'
miRNA:   3'- -UCUGGauCACCUAgCACACCac -5'
28864 3' -45.8 NC_006146.1 + 26552 0.68 0.999073
Target:  5'- -aGCCUGGUGGG-CGUaGUGGg- -3'
miRNA:   3'- ucUGGAUCACCUaGCA-CACCac -5'
28864 3' -45.8 NC_006146.1 + 118770 0.7 0.997016
Target:  5'- cGACCUGGUGGGgccCGaGcUGGUGu -3'
miRNA:   3'- uCUGGAUCACCUa--GCaC-ACCAC- -5'
28864 3' -45.8 NC_006146.1 + 60140 0.74 0.953203
Target:  5'- gGGACCUGGUGGGggGUGU-GUGc -3'
miRNA:   3'- -UCUGGAUCACCUagCACAcCAC- -5'
28864 3' -45.8 NC_006146.1 + 37711 1.06 0.036983
Target:  5'- gAGACCUAGUGGAUCGUGUGGUGu -3'
miRNA:   3'- -UCUGGAUCACCUAGCACACCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.