Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28865 | 5' | -47.7 | NC_006146.1 | + | 37478 | 1.02 | 0.034172 |
Target: 5'- cAGCACAUCACCGGCACUAGGUUc -3' miRNA: 3'- -UCGUGUAGUGGCCGUGAUCCAA- -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 41699 | 0.76 | 0.790129 |
Target: 5'- cAGCGC-UCACCGGCGggGGGUg -3' miRNA: 3'- -UCGUGuAGUGGCCGUgaUCCAa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 156767 | 0.73 | 0.89525 |
Target: 5'- cAGCGCGUaCACCuGGCugUAGGc- -3' miRNA: 3'- -UCGUGUA-GUGG-CCGugAUCCaa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 103663 | 0.73 | 0.909188 |
Target: 5'- uAGCGCAUgGCgGGCAuCUGGGg- -3' miRNA: 3'- -UCGUGUAgUGgCCGU-GAUCCaa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 121133 | 0.72 | 0.93899 |
Target: 5'- gAGaCACAUCAgCCGGCGuCUGGGc- -3' miRNA: 3'- -UC-GUGUAGU-GGCCGU-GAUCCaa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 64662 | 0.7 | 0.968781 |
Target: 5'- gGGCACGUCGCC-GUGgUAGGUg -3' miRNA: 3'- -UCGUGUAGUGGcCGUgAUCCAa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 55824 | 0.7 | 0.971978 |
Target: 5'- aGGC-CGUC-CCGGC-CUGGGUg -3' miRNA: 3'- -UCGuGUAGuGGCCGuGAUCCAa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 44900 | 0.7 | 0.974931 |
Target: 5'- uGGUACcUUgacgGCCGGCGCUGGGa- -3' miRNA: 3'- -UCGUGuAG----UGGCCGUGAUCCaa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 14052 | 0.69 | 0.980147 |
Target: 5'- aGGCGCAagCGCCGGCugGCUGcGGUc -3' miRNA: 3'- -UCGUGUa-GUGGCCG--UGAU-CCAa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 108218 | 0.69 | 0.982429 |
Target: 5'- cGCACG-CACCGcGCGCUuggcGGGUa -3' miRNA: 3'- uCGUGUaGUGGC-CGUGA----UCCAa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 40985 | 0.68 | 0.9881 |
Target: 5'- uGGUGCcgCGCCGGCGCcccAGGg- -3' miRNA: 3'- -UCGUGuaGUGGCCGUGa--UCCaa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 99792 | 0.68 | 0.989779 |
Target: 5'- gGGCGCAggugucucggaagggCACCGGCGaggGGGUg -3' miRNA: 3'- -UCGUGUa--------------GUGGCCGUga-UCCAa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 32128 | 0.68 | 0.992237 |
Target: 5'- uGcCACGUCACCccggGGUGCUGGGg- -3' miRNA: 3'- uC-GUGUAGUGG----CCGUGAUCCaa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 135958 | 0.68 | 0.992237 |
Target: 5'- uGcCACGUCACCccggGGUGCUGGGg- -3' miRNA: 3'- uC-GUGUAGUGG----CCGUGAUCCaa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 63969 | 0.67 | 0.994292 |
Target: 5'- aAGCACAcUCAgCCGGCug-AGGUUc -3' miRNA: 3'- -UCGUGU-AGU-GGCCGugaUCCAA- -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 60716 | 0.67 | 0.994292 |
Target: 5'- gGGcCGCAUCuccaACCGGCGCUgAGGc- -3' miRNA: 3'- -UC-GUGUAG----UGGCCGUGA-UCCaa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 59174 | 0.67 | 0.995141 |
Target: 5'- cAGCACGUCGUCGGa--UAGGUUg -3' miRNA: 3'- -UCGUGUAGUGGCCgugAUCCAA- -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 64227 | 0.67 | 0.995141 |
Target: 5'- aGGCACAUCugcgccuggGCCGGgGCgggAGGg- -3' miRNA: 3'- -UCGUGUAG---------UGGCCgUGa--UCCaa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 41207 | 0.67 | 0.995884 |
Target: 5'- aGGCGCcccaucCGCgGGCACUGGGc- -3' miRNA: 3'- -UCGUGua----GUGgCCGUGAUCCaa -5' |
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28865 | 5' | -47.7 | NC_006146.1 | + | 136742 | 0.67 | 0.996531 |
Target: 5'- gGGCGCAccccccacccUCGCCGGgGCUccGGGa- -3' miRNA: 3'- -UCGUGU----------AGUGGCCgUGA--UCCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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