miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28866 3' -44.8 NC_006146.1 + 10415 0.66 0.999964
Target:  5'- uACAcGGUGGuguuuGCGGUGCg- -3'
miRNA:   3'- cUGUaUCACCuau--CGCCACGau -5'
28866 3' -44.8 NC_006146.1 + 36408 0.72 0.990619
Target:  5'- aGCAUA-UGGAUAGCGGUucggGCUAa -3'
miRNA:   3'- cUGUAUcACCUAUCGCCA----CGAU- -5'
28866 3' -44.8 NC_006146.1 + 37117 0.7 0.997526
Target:  5'- uGCAUGG-GGAUGGUGGguaGCUGc -3'
miRNA:   3'- cUGUAUCaCCUAUCGCCa--CGAU- -5'
28866 3' -44.8 NC_006146.1 + 37307 1.04 0.049555
Target:  5'- aGACAUAGUGGAUAGCGGUGCUAu -3'
miRNA:   3'- -CUGUAUCACCUAUCGCCACGAU- -5'
28866 3' -44.8 NC_006146.1 + 37712 0.68 0.999434
Target:  5'- aGACcUAGUGGAUcguGUGGUGUUu -3'
miRNA:   3'- -CUGuAUCACCUAu--CGCCACGAu -5'
28866 3' -44.8 NC_006146.1 + 38149 0.69 0.999108
Target:  5'- uGACAc-GUGGAUGGgGGUGUUc -3'
miRNA:   3'- -CUGUauCACCUAUCgCCACGAu -5'
28866 3' -44.8 NC_006146.1 + 42729 0.67 0.99991
Target:  5'- uGGCAgccGcGGAUccgGGCGGUGCUGc -3'
miRNA:   3'- -CUGUau-CaCCUA---UCGCCACGAU- -5'
28866 3' -44.8 NC_006146.1 + 66485 0.69 0.998323
Target:  5'- gGGCAUGG-GGA-GGCuGGUGCUGa -3'
miRNA:   3'- -CUGUAUCaCCUaUCG-CCACGAU- -5'
28866 3' -44.8 NC_006146.1 + 68359 0.71 0.994084
Target:  5'- gGACGccucuGUGGAgauccccgUGGCGGUGCUGg -3'
miRNA:   3'- -CUGUau---CACCU--------AUCGCCACGAU- -5'
28866 3' -44.8 NC_006146.1 + 90042 0.66 0.999933
Target:  5'- ----cGGUGGAgcaggaGGUGGUGCUGg -3'
miRNA:   3'- cuguaUCACCUa-----UCGCCACGAU- -5'
28866 3' -44.8 NC_006146.1 + 97321 0.68 0.999554
Target:  5'- --uGUGGUGG-UGGCGGUGgUGa -3'
miRNA:   3'- cugUAUCACCuAUCGCCACgAU- -5'
28866 3' -44.8 NC_006146.1 + 112096 0.72 0.989008
Target:  5'- uGACAUugcuuggcucgggGGUGGA-GGUGGUGCUGg -3'
miRNA:   3'- -CUGUA-------------UCACCUaUCGCCACGAU- -5'
28866 3' -44.8 NC_006146.1 + 112168 0.74 0.966996
Target:  5'- cGGCAUGuGUGGuggcauUGGUGGUGCUGg -3'
miRNA:   3'- -CUGUAU-CACCu-----AUCGCCACGAU- -5'
28866 3' -44.8 NC_006146.1 + 116806 0.66 0.999951
Target:  5'- gGGCGUGGUGGAgGGCGuccaggacguGUGCc- -3'
miRNA:   3'- -CUGUAUCACCUaUCGC----------CACGau -5'
28866 3' -44.8 NC_006146.1 + 123860 0.71 0.994977
Target:  5'- uGGCAUAGUGGAcaaacGUGGUGaCUAu -3'
miRNA:   3'- -CUGUAUCACCUau---CGCCAC-GAU- -5'
28866 3' -44.8 NC_006146.1 + 143506 0.66 0.999964
Target:  5'- --uGUGGUGGAgUGGUGG-GCUGa -3'
miRNA:   3'- cugUAUCACCU-AUCGCCaCGAU- -5'
28866 3' -44.8 NC_006146.1 + 146584 0.66 0.999964
Target:  5'- --uGUGGUGGAgUGGUGG-GCUGa -3'
miRNA:   3'- cugUAUCACCU-AUCGCCaCGAU- -5'
28866 3' -44.8 NC_006146.1 + 149662 0.66 0.999964
Target:  5'- --uGUGGUGGAgUGGUGG-GCUGa -3'
miRNA:   3'- cugUAUCACCU-AUCGCCaCGAU- -5'
28866 3' -44.8 NC_006146.1 + 152739 0.66 0.999964
Target:  5'- --uGUGGUGGAgUGGUGG-GCUGa -3'
miRNA:   3'- cugUAUCACCU-AUCGCCaCGAU- -5'
28866 3' -44.8 NC_006146.1 + 155817 0.66 0.999964
Target:  5'- --uGUGGUGGAgUGGUGG-GCUGa -3'
miRNA:   3'- cugUAUCACCU-AUCGCCaCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.