Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28867 | 5' | -41 | NC_006146.1 | + | 167925 | 0.66 | 1 |
Target: 5'- aGGUAcuGGCCGuacucgUACCUCGc -3' miRNA: 3'- gUCAU--UCGGCuacaa-AUGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 4421 | 0.66 | 1 |
Target: 5'- aCGGUccagGGGCUGGUGaaaagcgGCCUCGu -3' miRNA: 3'- -GUCA----UUCGGCUACaaa----UGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 149283 | 0.66 | 1 |
Target: 5'- -cGUAGGCCGGgu----CCUCGg -3' miRNA: 3'- guCAUUCGGCUacaaauGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 111975 | 0.67 | 1 |
Target: 5'- aCAGauuGGCCGA-GUUcaugGCCUCGc -3' miRNA: 3'- -GUCau-UCGGCUaCAAa---UGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 150866 | 0.67 | 1 |
Target: 5'- gGGgaugAGGCCGGUGaugcggACCUUGg -3' miRNA: 3'- gUCa---UUCGGCUACaaa---UGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 159783 | 0.67 | 1 |
Target: 5'- aGGUAGGCCGAgggGUcgaGCCcaUCGg -3' miRNA: 3'- gUCAUUCGGCUa--CAaa-UGG--AGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 112434 | 0.67 | 1 |
Target: 5'- uCAGgaGGCUGAUGUgcUUGCCg-- -3' miRNA: 3'- -GUCauUCGGCUACA--AAUGGagc -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 45066 | 0.68 | 1 |
Target: 5'- gGGgcGGCUGAgg--UGCCUCGu -3' miRNA: 3'- gUCauUCGGCUacaaAUGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 153873 | 0.68 | 1 |
Target: 5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3' miRNA: 3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 150795 | 0.68 | 1 |
Target: 5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3' miRNA: 3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 147717 | 0.68 | 1 |
Target: 5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3' miRNA: 3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 144640 | 0.68 | 1 |
Target: 5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3' miRNA: 3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 141562 | 0.68 | 1 |
Target: 5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3' miRNA: 3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 106983 | 0.68 | 1 |
Target: 5'- cCAGUAGGCacaaGggUGCCUCGu -3' miRNA: 3'- -GUCAUUCGgcuaCaaAUGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 112510 | 0.68 | 1 |
Target: 5'- gCGGUccagGGGCCGGUGgaggGCCUgGg -3' miRNA: 3'- -GUCA----UUCGGCUACaaa-UGGAgC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 95739 | 0.68 | 1 |
Target: 5'- cCAGUGgggggGGCUGGUGUUgGCCcCGg -3' miRNA: 3'- -GUCAU-----UCGGCUACAAaUGGaGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 77961 | 0.68 | 1 |
Target: 5'- uGGgccgGAGCCGGUG---GCCUUGg -3' miRNA: 3'- gUCa---UUCGGCUACaaaUGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 156951 | 0.68 | 1 |
Target: 5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3' miRNA: 3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 39651 | 0.69 | 1 |
Target: 5'- aGGUGGGCUGAgac-UGCCUUGg -3' miRNA: 3'- gUCAUUCGGCUacaaAUGGAGC- -5' |
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28867 | 5' | -41 | NC_006146.1 | + | 153889 | 0.69 | 0.999999 |
Target: 5'- gCAGUAGGCCGuucUGUUUucgaGCUUCc -3' miRNA: 3'- -GUCAUUCGGCu--ACAAA----UGGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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