miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28868 5' -44.8 NC_006146.1 + 41430 0.66 0.999978
Target:  5'- gGGUGGGCGGCUcuccUCGCUa-- -3'
miRNA:   3'- gUUACCCGUCGAuauaAGUGGaau -5'
28868 5' -44.8 NC_006146.1 + 164265 0.66 0.999978
Target:  5'- ---aGGGCAGCguaggucccggGUGUUCACUa-- -3'
miRNA:   3'- guuaCCCGUCGa----------UAUAAGUGGaau -5'
28868 5' -44.8 NC_006146.1 + 6528 0.66 0.999969
Target:  5'- gGcgGcGGCGGCaacaGUGUUCACCUa- -3'
miRNA:   3'- gUuaC-CCGUCGa---UAUAAGUGGAau -5'
28868 5' -44.8 NC_006146.1 + 72401 0.66 0.999966
Target:  5'- aUAGUGGGCAGUUugucagagaacauaAUuggCGCCUUAa -3'
miRNA:   3'- -GUUACCCGUCGA--------------UAuaaGUGGAAU- -5'
28868 5' -44.8 NC_006146.1 + 10178 0.66 0.999957
Target:  5'- ---aGGGCccuauacGCUGUGUUCACCc-- -3'
miRNA:   3'- guuaCCCGu------CGAUAUAAGUGGaau -5'
28868 5' -44.8 NC_006146.1 + 114173 0.66 0.999957
Target:  5'- --cUGGGCAGCaggg-UCACCa-- -3'
miRNA:   3'- guuACCCGUCGauauaAGUGGaau -5'
28868 5' -44.8 NC_006146.1 + 35612 0.66 0.999957
Target:  5'- -uGUGGGCAGCU------GCCUUAg -3'
miRNA:   3'- guUACCCGUCGAuauaagUGGAAU- -5'
28868 5' -44.8 NC_006146.1 + 24115 0.67 0.999921
Target:  5'- ---aGGGCGGCUGg---CACCg-- -3'
miRNA:   3'- guuaCCCGUCGAUauaaGUGGaau -5'
28868 5' -44.8 NC_006146.1 + 71294 0.67 0.999861
Target:  5'- -cGUGGGCAGUUGUGUgcuuCCUc- -3'
miRNA:   3'- guUACCCGUCGAUAUAagu-GGAau -5'
28868 5' -44.8 NC_006146.1 + 104691 0.68 0.999691
Target:  5'- ---gGGGCAGCUGggccuggaucUcgUCGCCUg- -3'
miRNA:   3'- guuaCCCGUCGAU----------AuaAGUGGAau -5'
28868 5' -44.8 NC_006146.1 + 162347 0.68 0.999604
Target:  5'- ---cGGGCugcAGCUAUGagCGCCUUGg -3'
miRNA:   3'- guuaCCCG---UCGAUAUaaGUGGAAU- -5'
28868 5' -44.8 NC_006146.1 + 43631 0.68 0.999496
Target:  5'- gAGUGGGCGGCggggcGUGgcCGCCUg- -3'
miRNA:   3'- gUUACCCGUCGa----UAUaaGUGGAau -5'
28868 5' -44.8 NC_006146.1 + 133927 0.69 0.999364
Target:  5'- cCGGUGGGCcGCa--GUUCACCUa- -3'
miRNA:   3'- -GUUACCCGuCGauaUAAGUGGAau -5'
28868 5' -44.8 NC_006146.1 + 49808 0.69 0.999364
Target:  5'- aGAUGGGUGGCUGUcgUCGaucgcCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAuaAGU-----GGAau -5'
28868 5' -44.8 NC_006146.1 + 66579 0.7 0.998489
Target:  5'- ----cGGCAGCUGUAU-CGCCUUu -3'
miRNA:   3'- guuacCCGUCGAUAUAaGUGGAAu -5'
28868 5' -44.8 NC_006146.1 + 155785 0.7 0.99776
Target:  5'- aGAUGGGUGGCUGUGUguagugugUGCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAUAa-------GUGGAau -5'
28868 5' -44.8 NC_006146.1 + 152707 0.7 0.99776
Target:  5'- aGAUGGGUGGCUGUGUguagugugUGCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAUAa-------GUGGAau -5'
28868 5' -44.8 NC_006146.1 + 149630 0.7 0.99776
Target:  5'- aGAUGGGUGGCUGUGUguagugugUGCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAUAa-------GUGGAau -5'
28868 5' -44.8 NC_006146.1 + 146552 0.7 0.99776
Target:  5'- aGAUGGGUGGCUGUGUguagugugUGCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAUAa-------GUGGAau -5'
28868 5' -44.8 NC_006146.1 + 143474 0.7 0.99776
Target:  5'- aGAUGGGUGGCUGUGUguagugugUGCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAUAa-------GUGGAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.