miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28869 3' -54 NC_006146.1 + 53536 0.66 0.943487
Target:  5'- gAAGGCcgcgaggaccgagGGGCuucuGGGGGUgacGGUGAUCUg- -3'
miRNA:   3'- -UUUCG-------------UCUGu---CCCCCA---CCACUAGAaa -5'
28869 3' -54 NC_006146.1 + 48592 0.66 0.939176
Target:  5'- aAGAGcCAGACGauGGGGGUGGcaaAUCUg- -3'
miRNA:   3'- -UUUC-GUCUGU--CCCCCACCac-UAGAaa -5'
28869 3' -54 NC_006146.1 + 34009 0.66 0.934145
Target:  5'- gAAGGCAGGgGGGGGGUcggggcaggcggGcGUGGUCc-- -3'
miRNA:   3'- -UUUCGUCUgUCCCCCA------------C-CACUAGaaa -5'
28869 3' -54 NC_006146.1 + 39380 0.66 0.928858
Target:  5'- gGAGGguGAgaaAGGGGGUGGU--UCUg- -3'
miRNA:   3'- -UUUCguCUg--UCCCCCACCAcuAGAaa -5'
28869 3' -54 NC_006146.1 + 18388 0.66 0.928858
Target:  5'- --uGguGGCc-GGGGUGGUGAUCc-- -3'
miRNA:   3'- uuuCguCUGucCCCCACCACUAGaaa -5'
28869 3' -54 NC_006146.1 + 128409 0.66 0.928315
Target:  5'- cAGGCAGAacacggcCAGGGGaG-GGUGAUCc-- -3'
miRNA:   3'- uUUCGUCU-------GUCCCC-CaCCACUAGaaa -5'
28869 3' -54 NC_006146.1 + 126000 0.67 0.905154
Target:  5'- cGAGGCuugGGAguGGGGGcGGUGggCUUc -3'
miRNA:   3'- -UUUCG---UCUguCCCCCaCCACuaGAAa -5'
28869 3' -54 NC_006146.1 + 94557 0.68 0.884737
Target:  5'- uGAGGguGGCGuGGaGGGUGGUGAg---- -3'
miRNA:   3'- -UUUCguCUGU-CC-CCCACCACUagaaa -5'
28869 3' -54 NC_006146.1 + 77832 0.68 0.877447
Target:  5'- -cGGCGGAgGGGGGGgcgggggGGUGGgaCUUUg -3'
miRNA:   3'- uuUCGUCUgUCCCCCa------CCACUa-GAAA- -5'
28869 3' -54 NC_006146.1 + 102591 0.68 0.862168
Target:  5'- --uGCAGGuCGGGGGGUcuaggGGUGAgcgCUUUc -3'
miRNA:   3'- uuuCGUCU-GUCCCCCA-----CCACUa--GAAA- -5'
28869 3' -54 NC_006146.1 + 157216 0.68 0.862168
Target:  5'- gAAAGCGGGgGGGGGGgacuggGGUGGa---- -3'
miRNA:   3'- -UUUCGUCUgUCCCCCa-----CCACUagaaa -5'
28869 3' -54 NC_006146.1 + 144904 0.68 0.862168
Target:  5'- gAAAGCGGGgGGGGGGgacuggGGUGGa---- -3'
miRNA:   3'- -UUUCGUCUgUCCCCCa-----CCACUagaaa -5'
28869 3' -54 NC_006146.1 + 147982 0.68 0.862168
Target:  5'- gAAAGCGGGgGGGGGGgacuggGGUGGa---- -3'
miRNA:   3'- -UUUCGUCUgUCCCCCa-----CCACUagaaa -5'
28869 3' -54 NC_006146.1 + 151060 0.68 0.862168
Target:  5'- gAAAGCGGGgGGGGGGgacuggGGUGGa---- -3'
miRNA:   3'- -UUUCGUCUgUCCCCCa-----CCACUagaaa -5'
28869 3' -54 NC_006146.1 + 154138 0.68 0.862168
Target:  5'- gAAAGCGGGgGGGGGGgacuggGGUGGa---- -3'
miRNA:   3'- -UUUCGUCUgUCCCCCa-----CCACUagaaa -5'
28869 3' -54 NC_006146.1 + 141826 0.68 0.862168
Target:  5'- gAAAGCGGGgGGGGGGgacuggGGUGGa---- -3'
miRNA:   3'- -UUUCGUCUgUCCCCCa-----CCACUagaaa -5'
28869 3' -54 NC_006146.1 + 40073 0.69 0.846
Target:  5'- --uGUGGGCGGcGGGGUGG-GGUCUc- -3'
miRNA:   3'- uuuCGUCUGUC-CCCCACCaCUAGAaa -5'
28869 3' -54 NC_006146.1 + 154674 0.69 0.837601
Target:  5'- --uGguGGCGGGGGGcgcugcugcugGGUGGUCUg- -3'
miRNA:   3'- uuuCguCUGUCCCCCa----------CCACUAGAaa -5'
28869 3' -54 NC_006146.1 + 132943 0.69 0.82021
Target:  5'- --cGCGGAgGGGGGG-GGUGGUg--- -3'
miRNA:   3'- uuuCGUCUgUCCCCCaCCACUAgaaa -5'
28869 3' -54 NC_006146.1 + 35880 0.69 0.811235
Target:  5'- --uGUGGAguGGGGGUGGUGGg---- -3'
miRNA:   3'- uuuCGUCUguCCCCCACCACUagaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.