miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28869 5' -52.3 NC_006146.1 + 47744 0.66 0.98384
Target:  5'- cCGGGGccuccUCGCGCGCCCugGCg----- -3'
miRNA:   3'- uGUUCC-----AGUGUGUGGGugCGauagau -5'
28869 5' -52.3 NC_006146.1 + 21805 0.66 0.981838
Target:  5'- uGCcGGG-CGCGCGCCCcCGUUGUUa- -3'
miRNA:   3'- -UGuUCCaGUGUGUGGGuGCGAUAGau -5'
28869 5' -52.3 NC_006146.1 + 149102 0.66 0.979654
Target:  5'- aACGGGGgCGCGCGCCCGgcauccCGCUGggCUu -3'
miRNA:   3'- -UGUUCCaGUGUGUGGGU------GCGAUa-GAu -5'
28869 5' -52.3 NC_006146.1 + 61541 0.66 0.977281
Target:  5'- cCGGGGg---ACGCCCuCGCUGUCUAu -3'
miRNA:   3'- uGUUCCagugUGUGGGuGCGAUAGAU- -5'
28869 5' -52.3 NC_006146.1 + 9586 0.66 0.97471
Target:  5'- gACAGGGUCAgGgGCuucaCCACGCUAa--- -3'
miRNA:   3'- -UGUUCCAGUgUgUG----GGUGCGAUagau -5'
28869 5' -52.3 NC_006146.1 + 79636 0.67 0.971933
Target:  5'- gACAGGGUCACAgGCCgGCGa------ -3'
miRNA:   3'- -UGUUCCAGUGUgUGGgUGCgauagau -5'
28869 5' -52.3 NC_006146.1 + 59976 0.67 0.968944
Target:  5'- aGCAGGGgCACGagaCCAUGCUGUCc- -3'
miRNA:   3'- -UGUUCCaGUGUgugGGUGCGAUAGau -5'
28869 5' -52.3 NC_006146.1 + 8258 0.67 0.968944
Target:  5'- uACGAGGgggCAUGCACCCcCGUUcUCUc -3'
miRNA:   3'- -UGUUCCa--GUGUGUGGGuGCGAuAGAu -5'
28869 5' -52.3 NC_006146.1 + 44433 0.67 0.965735
Target:  5'- cCGGGGUCugGCACCCGUGCcAUa-- -3'
miRNA:   3'- uGUUCCAGugUGUGGGUGCGaUAgau -5'
28869 5' -52.3 NC_006146.1 + 54890 0.67 0.965735
Target:  5'- aGCGGGGUC---CGCUCGCGCcGUCUGg -3'
miRNA:   3'- -UGUUCCAGuguGUGGGUGCGaUAGAU- -5'
28869 5' -52.3 NC_006146.1 + 108124 0.67 0.965735
Target:  5'- gACAGGGggCAgACACCCacACGCUGg--- -3'
miRNA:   3'- -UGUUCCa-GUgUGUGGG--UGCGAUagau -5'
28869 5' -52.3 NC_006146.1 + 77317 0.67 0.965735
Target:  5'- gGC-GGGUCGCGCauGCCCAgGCUGa--- -3'
miRNA:   3'- -UGuUCCAGUGUG--UGGGUgCGAUagau -5'
28869 5' -52.3 NC_006146.1 + 161074 0.67 0.965735
Target:  5'- gGCuuGGUgACACACCCugGCa----- -3'
miRNA:   3'- -UGuuCCAgUGUGUGGGugCGauagau -5'
28869 5' -52.3 NC_006146.1 + 118596 0.67 0.962299
Target:  5'- uCAGGGUCA-GCACCUACGCg----- -3'
miRNA:   3'- uGUUCCAGUgUGUGGGUGCGauagau -5'
28869 5' -52.3 NC_006146.1 + 25859 0.67 0.95863
Target:  5'- cCAGGGcUGCGCGCUCACGCUGc--- -3'
miRNA:   3'- uGUUCCaGUGUGUGGGUGCGAUagau -5'
28869 5' -52.3 NC_006146.1 + 161394 0.68 0.936641
Target:  5'- uGCAAGGUCaACGCguACCCGCGaccguaUGUCc- -3'
miRNA:   3'- -UGUUCCAG-UGUG--UGGGUGCg-----AUAGau -5'
28869 5' -52.3 NC_006146.1 + 64384 0.69 0.931491
Target:  5'- cCAGGGg-AUGCGCCCAC-CUGUCUGa -3'
miRNA:   3'- uGUUCCagUGUGUGGGUGcGAUAGAU- -5'
28869 5' -52.3 NC_006146.1 + 105678 0.69 0.920427
Target:  5'- aGCGAGGUCACcucuggACGCCCGgGCUc---- -3'
miRNA:   3'- -UGUUCCAGUG------UGUGGGUgCGAuagau -5'
28869 5' -52.3 NC_006146.1 + 60825 0.71 0.842001
Target:  5'- aGCAGGGaCgagcugcuGCACACCCGCGCUG-CUu -3'
miRNA:   3'- -UGUUCCaG--------UGUGUGGGUGCGAUaGAu -5'
28869 5' -52.3 NC_006146.1 + 18655 0.71 0.830942
Target:  5'- cCAGGGaUCGCAUGCCCggccuucgcaggcgACGCUAUCa- -3'
miRNA:   3'- uGUUCC-AGUGUGUGGG--------------UGCGAUAGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.