Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2887 | 3' | -60.5 | NC_001493.1 | + | 131257 | 0.69 | 0.524004 |
Target: 5'- cUCGGuGAGCGCaucgagACCCuCCGg-GCCACCu -3' miRNA: 3'- -AGCU-CUCGCGg-----UGGG-GGUagCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 69304 | 0.69 | 0.514477 |
Target: 5'- cCGAGuAGUcCCgACCCCCAacccagUCGCaCACCg -3' miRNA: 3'- aGCUC-UCGcGG-UGGGGGU------AGCG-GUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 82228 | 0.68 | 0.561753 |
Target: 5'- cUCGAccuccucGGGCugGCCACCCCCGauaUUGUCGCg -3' miRNA: 3'- -AGCU-------CUCG--CGGUGGGGGU---AGCGGUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 21237 | 0.68 | 0.562732 |
Target: 5'- uUC-AGGcCGCCGCCCCuggugaagccgCAUCGCCGCa -3' miRNA: 3'- -AGcUCUcGCGGUGGGG-----------GUAGCGGUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 66581 | 0.68 | 0.562732 |
Target: 5'- cUCGGGAuaGUGCCGCCCCCcuacuAUUaCgGCCg -3' miRNA: 3'- -AGCUCU--CGCGGUGGGGG-----UAGcGgUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 24924 | 0.68 | 0.602186 |
Target: 5'- aUGAGAGCGCCGuuCCCuguuaCGggugaaaaauaCCACCa -3' miRNA: 3'- aGCUCUCGCGGUggGGGua---GC-----------GGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 28270 | 0.68 | 0.572542 |
Target: 5'- cUCGcGGAGCGCCGCCUCgcUCGCaACg -3' miRNA: 3'- -AGC-UCUCGCGGUGGGGguAGCGgUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 5691 | 0.68 | 0.602186 |
Target: 5'- aUCGAGAGUGgCAgcuCCCCCGggaaaCGCC-CUc -3' miRNA: 3'- -AGCUCUCGCgGU---GGGGGUa----GCGGuGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 126380 | 0.68 | 0.592275 |
Target: 5'- -aGAGAGCagacGCUaaauACCCgaaCCAUgGCCGCCg -3' miRNA: 3'- agCUCUCG----CGG----UGGG---GGUAgCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 121245 | 0.68 | 0.602186 |
Target: 5'- aUCGAGAGUGgCAgcuCCCCCGggaaaCGCC-CUc -3' miRNA: 3'- -AGCUCUCGCgGU---GGGGGUa----GCGGuGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 115535 | 0.68 | 0.602186 |
Target: 5'- aUCcAGAcccacccuCGCCACCCCCA-CGCCcCCu -3' miRNA: 3'- -AGcUCUc-------GCGGUGGGGGUaGCGGuGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 69510 | 0.68 | 0.592275 |
Target: 5'- cCGAGGgguauggcgcGCGCCuuCCCCAUCGCguUACa -3' miRNA: 3'- aGCUCU----------CGCGGugGGGGUAGCG--GUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 30881 | 0.68 | 0.571559 |
Target: 5'- aUCcAGAGUcCCccacaucGCCCCCAU-GCCACCg -3' miRNA: 3'- -AGcUCUCGcGG-------UGGGGGUAgCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 33055 | 0.68 | 0.592275 |
Target: 5'- gUGAGAuacuggGuCGUCACCCUCAggGCCACUa -3' miRNA: 3'- aGCUCU------C-GCGGUGGGGGUagCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 63381 | 0.68 | 0.572542 |
Target: 5'- aCGGGAGCGaCCGCa-CCGUgGUgACCa -3' miRNA: 3'- aGCUCUCGC-GGUGggGGUAgCGgUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 121416 | 0.68 | 0.582391 |
Target: 5'- aUCGAGAGgGCguUUCCCGggggaGCUGCCa -3' miRNA: 3'- -AGCUCUCgCGguGGGGGUag---CGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 5862 | 0.68 | 0.582391 |
Target: 5'- aUCGAGAGgGCguUUCCCGggggaGCUGCCa -3' miRNA: 3'- -AGCUCUCgCGguGGGGGUag---CGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 10826 | 0.68 | 0.592275 |
Target: 5'- -aGAGAGCagacGCUaaauACCCgaaCCAUgGCCGCCg -3' miRNA: 3'- agCUCUCG----CGG----UGGG---GGUAgCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 107051 | 0.68 | 0.572542 |
Target: 5'- -aGAaccGGgGCCGCCCUCAggUCGaCCGCCg -3' miRNA: 3'- agCUc--UCgCGGUGGGGGU--AGC-GGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 62040 | 0.68 | 0.602186 |
Target: 5'- cCGAuGA-CGCCgcauugauaGCCCCgGUCGUCGCCc -3' miRNA: 3'- aGCU-CUcGCGG---------UGGGGgUAGCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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