miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2887 3' -60.5 NC_001493.1 + 65811 0.69 0.49564
Target:  5'- uUCGAGAGCGUauCGCUagaaCCCGaUGCUGCCg -3'
miRNA:   3'- -AGCUCUCGCG--GUGG----GGGUaGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 63381 0.68 0.572542
Target:  5'- aCGGGAGCGaCCGCa-CCGUgGUgACCa -3'
miRNA:   3'- aGCUCUCGC-GGUGggGGUAgCGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 63001 0.67 0.622065
Target:  5'- aCGGGAGCGaccggCACCgugaCCGUCGCgACg -3'
miRNA:   3'- aGCUCUCGCg----GUGGg---GGUAGCGgUGg -5'
2887 3' -60.5 NC_001493.1 + 62066 0.66 0.70127
Target:  5'- aUCGAGAGUuuaucaggggcuGUCACUaCCgGUUGCCgACCg -3'
miRNA:   3'- -AGCUCUCG------------CGGUGG-GGgUAGCGG-UGG- -5'
2887 3' -60.5 NC_001493.1 + 62040 0.68 0.602186
Target:  5'- cCGAuGA-CGCCgcauugauaGCCCCgGUCGUCGCCc -3'
miRNA:   3'- aGCU-CUcGCGG---------UGGGGgUAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 61562 0.66 0.678677
Target:  5'- aCGGGGcGCGCCAUCUCUggcuccucguccgaGUCGCuCACg -3'
miRNA:   3'- aGCUCU-CGCGGUGGGGG--------------UAGCG-GUGg -5'
2887 3' -60.5 NC_001493.1 + 60442 0.66 0.70127
Target:  5'- cCGcGGGCGCgAUCCCCAgucugaCGCgUACCc -3'
miRNA:   3'- aGCuCUCGCGgUGGGGGUa-----GCG-GUGG- -5'
2887 3' -60.5 NC_001493.1 + 59882 0.69 0.543255
Target:  5'- gUCG-GAGCGaugCGCCgCCGugcUCGUCACCg -3'
miRNA:   3'- -AGCuCUCGCg--GUGGgGGU---AGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 57414 0.71 0.42376
Target:  5'- gUCGucAGCGCCcuucguuuccggGCaCCCGUCGUCGCCg -3'
miRNA:   3'- -AGCucUCGCGG------------UGgGGGUAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 56566 0.67 0.632018
Target:  5'- gCGAcGAGUGCCGCgCUggacaugguUAUCGCgGCCa -3'
miRNA:   3'- aGCU-CUCGCGGUGgGG---------GUAGCGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 54866 0.73 0.31436
Target:  5'- -gGGGAGCgaguggugcgaGCCGCCCCgGUCagcgccccgccGCCACCa -3'
miRNA:   3'- agCUCUCG-----------CGGUGGGGgUAG-----------CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 53205 0.66 0.714885
Target:  5'- cUCGAGAcgagcgagcacaaccGCGUaagaUACCCCCGUacuccCGCCuCCg -3'
miRNA:   3'- -AGCUCU---------------CGCG----GUGGGGGUA-----GCGGuGG- -5'
2887 3' -60.5 NC_001493.1 + 48469 0.7 0.441157
Target:  5'- -aGAccGUGCCACCCaCgAUCGCCGCg -3'
miRNA:   3'- agCUcuCGCGGUGGG-GgUAGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 48271 0.7 0.450006
Target:  5'- gUCGGGuGCGCCgagGCCCuCCAcgCGgUACCg -3'
miRNA:   3'- -AGCUCuCGCGG---UGGG-GGUa-GCgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 46678 0.69 0.543255
Target:  5'- -gGAGAGCGCaugGCCaCCAUCGCgGgCg -3'
miRNA:   3'- agCUCUCGCGg--UGGgGGUAGCGgUgG- -5'
2887 3' -60.5 NC_001493.1 + 45089 0.69 0.524004
Target:  5'- ---cGGGCaGCCACCaaCAUCGCgGCCg -3'
miRNA:   3'- agcuCUCG-CGGUGGggGUAGCGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 42946 0.72 0.366256
Target:  5'- --aGGAGCGCCgauaACCCCgAUCGCUuCCu -3'
miRNA:   3'- agcUCUCGCGG----UGGGGgUAGCGGuGG- -5'
2887 3' -60.5 NC_001493.1 + 42750 0.67 0.622065
Target:  5'- cCGAGccCGCCgugaaGCCacaaCCgAUCGCCACCa -3'
miRNA:   3'- aGCUCucGCGG-----UGGg---GG-UAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 39916 0.67 0.651918
Target:  5'- aUCGAGAugauCGCUuCCCUCGUCGCgCuCCg -3'
miRNA:   3'- -AGCUCUc---GCGGuGGGGGUAGCG-GuGG- -5'
2887 3' -60.5 NC_001493.1 + 39482 0.67 0.632018
Target:  5'- aUCGGGAucggcgucaGCGUCACCCgCGUCacgccggaucCCACCa -3'
miRNA:   3'- -AGCUCU---------CGCGGUGGGgGUAGc---------GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.