Results 81 - 97 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2887 | 3' | -60.5 | NC_001493.1 | + | 14470 | 0.71 | 0.398453 |
Target: 5'- cUCGAGAGCGCguCUgCC---GCCACCa -3' miRNA: 3'- -AGCUCUCGCGguGGgGGuagCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 14394 | 0.66 | 0.711007 |
Target: 5'- cCGuGAGguuaGCgGCCCCCG-CGUCGCUc -3' miRNA: 3'- aGCuCUCg---CGgUGGGGGUaGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 14287 | 1.12 | 0.000653 |
Target: 5'- uUCGAGAGCGCCACCCCCAUCGCCACCa -3' miRNA: 3'- -AGCUCUCGCGGUGGGGGUAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 13628 | 0.7 | 0.467991 |
Target: 5'- aUCGAcGGCGCaCGCCUCCGucUCGCaCGCg -3' miRNA: 3'- -AGCUcUCGCG-GUGGGGGU--AGCG-GUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 12953 | 0.7 | 0.441157 |
Target: 5'- gCGGGcGCugGCCGCCgCCgaGUCGCCAUCg -3' miRNA: 3'- aGCUCuCG--CGGUGGgGG--UAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 12672 | 0.66 | 0.68065 |
Target: 5'- gCGAguaucccGAGCGCCccgACCCCgGaCGCgACCc -3' miRNA: 3'- aGCU-------CUCGCGG---UGGGGgUaGCGgUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 10826 | 0.68 | 0.592275 |
Target: 5'- -aGAGAGCagacGCUaaauACCCgaaCCAUgGCCGCCg -3' miRNA: 3'- agCUCUCG----CGG----UGGG---GGUAgCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 10647 | 0.66 | 0.711007 |
Target: 5'- cUCGGGAcGCGCCcgaucgcgcgaGCuCCCCGgguUCGaCACCc -3' miRNA: 3'- -AGCUCU-CGCGG-----------UG-GGGGU---AGCgGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 9943 | 0.73 | 0.300592 |
Target: 5'- -aGGGAGCGCCGCgaCCAUCacaaaCCACCg -3' miRNA: 3'- agCUCUCGCGGUGggGGUAGc----GGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 9325 | 0.7 | 0.441157 |
Target: 5'- gCGAuGGUucgcaucacgGCCuCCCCCcUCGCCGCCa -3' miRNA: 3'- aGCUcUCG----------CGGuGGGGGuAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 9113 | 0.67 | 0.622065 |
Target: 5'- aCGGGAGCcgcgggGUCAUCCCCG-CGaCCGCg -3' miRNA: 3'- aGCUCUCG------CGGUGGGGGUaGC-GGUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 8501 | 0.66 | 0.678677 |
Target: 5'- gCGAGAcGCGCgGCCCCUccacguucgaagcgGgcacggcgCGCCACg -3' miRNA: 3'- aGCUCU-CGCGgUGGGGG--------------Ua-------GCGGUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 8051 | 0.66 | 0.70127 |
Target: 5'- cCG-GGGCGUCcguugaaaucgACCCUCGUUucgggGCCACCg -3' miRNA: 3'- aGCuCUCGCGG-----------UGGGGGUAG-----CGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 5862 | 0.68 | 0.582391 |
Target: 5'- aUCGAGAGgGCguUUCCCGggggaGCUGCCa -3' miRNA: 3'- -AGCUCUCgCGguGGGGGUag---CGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 5691 | 0.68 | 0.602186 |
Target: 5'- aUCGAGAGUGgCAgcuCCCCCGggaaaCGCC-CUc -3' miRNA: 3'- -AGCUCUCGCgGU---GGGGGUa----GCGGuGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 5165 | 0.72 | 0.382129 |
Target: 5'- cCGuGGGCauagugucGUCGCCCUCAUCGUCGCUa -3' miRNA: 3'- aGCuCUCG--------CGGUGGGGGUAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 3191 | 0.7 | 0.467991 |
Target: 5'- gUCGAGGaUGCCAUCCCCGcgGCCGuCCc -3' miRNA: 3'- -AGCUCUcGCGGUGGGGGUagCGGU-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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