miRNA display CGI


Results 61 - 80 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2887 3' -60.5 NC_001493.1 + 46678 0.69 0.543255
Target:  5'- -gGAGAGCGCaugGCCaCCAUCGCgGgCg -3'
miRNA:   3'- agCUCUCGCGg--UGGgGGUAGCGgUgG- -5'
2887 3' -60.5 NC_001493.1 + 63381 0.68 0.572542
Target:  5'- aCGGGAGCGaCCGCa-CCGUgGUgACCa -3'
miRNA:   3'- aGCUCUCGC-GGUGggGGUAgCGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 121416 0.68 0.582391
Target:  5'- aUCGAGAGgGCguUUCCCGggggaGCUGCCa -3'
miRNA:   3'- -AGCUCUCgCGguGGGGGUag---CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 5862 0.68 0.582391
Target:  5'- aUCGAGAGgGCguUUCCCGggggaGCUGCCa -3'
miRNA:   3'- -AGCUCUCgCGguGGGGGUag---CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 33055 0.68 0.592275
Target:  5'- gUGAGAuacuggGuCGUCACCCUCAggGCCACUa -3'
miRNA:   3'- aGCUCU------C-GCGGUGGGGGUagCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 69510 0.68 0.592275
Target:  5'- cCGAGGgguauggcgcGCGCCuuCCCCAUCGCguUACa -3'
miRNA:   3'- aGCUCU----------CGCGGugGGGGUAGCG--GUGg -5'
2887 3' -60.5 NC_001493.1 + 3191 0.7 0.467991
Target:  5'- gUCGAGGaUGCCAUCCCCGcgGCCGuCCc -3'
miRNA:   3'- -AGCUCUcGCGGUGGGGGUagCGGU-GG- -5'
2887 3' -60.5 NC_001493.1 + 118745 0.7 0.467991
Target:  5'- gUCGAGGaUGCCAUCCCCGcgGCCGuCCc -3'
miRNA:   3'- -AGCUCUcGCGGUGGGGGUagCGGU-GG- -5'
2887 3' -60.5 NC_001493.1 + 84043 0.7 0.467991
Target:  5'- -gGGGAGCGCCGCgCgCCGgacgaacacgGCCACCu -3'
miRNA:   3'- agCUCUCGCGGUGgG-GGUag--------CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 14287 1.12 0.000653
Target:  5'- uUCGAGAGCGCCACCCCCAUCGCCACCa -3'
miRNA:   3'- -AGCUCUCGCGGUGGGGGUAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 42946 0.72 0.366256
Target:  5'- --aGGAGCGCCgauaACCCCgAUCGCUuCCu -3'
miRNA:   3'- agcUCUCGCGG----UGGGGgUAGCGGuGG- -5'
2887 3' -60.5 NC_001493.1 + 15703 0.72 0.382129
Target:  5'- cUCGGuGAGCGCaucgagACCCuCCGggGCCACCu -3'
miRNA:   3'- -AGCU-CUCGCGg-----UGGG-GGUagCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 120719 0.72 0.382129
Target:  5'- cCGuGGGCauagugucGUCGCCCUCAUCGUCGCUa -3'
miRNA:   3'- aGCuCUCG--------CGGUGGGGGUAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 5165 0.72 0.382129
Target:  5'- cCGuGGGCauagugucGUCGCCCUCAUCGUCGCUa -3'
miRNA:   3'- aGCuCUCG--------CGGUGGGGGUAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 14470 0.71 0.398453
Target:  5'- cUCGAGAGCGCguCUgCC---GCCACCa -3'
miRNA:   3'- -AGCUCUCGCGguGGgGGuagCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 124879 0.7 0.441157
Target:  5'- gCGAuGGUucgcaucacgGCCuCCCCCcUCGCCGCCa -3'
miRNA:   3'- aGCUcUCG----------CGGuGGGGGuAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 9325 0.7 0.441157
Target:  5'- gCGAuGGUucgcaucacgGCCuCCCCCcUCGCCGCCa -3'
miRNA:   3'- aGCUcUCG----------CGGuGGGGGuAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 48271 0.7 0.450006
Target:  5'- gUCGGGuGCGCCgagGCCCuCCAcgCGgUACCg -3'
miRNA:   3'- -AGCUCuCGCGG---UGGG-GGUa-GCgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 67667 0.7 0.467991
Target:  5'- gCGAGuAGCGCCAaCCCCGaUGgUACCa -3'
miRNA:   3'- aGCUC-UCGCGGUgGGGGUaGCgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 28128 0.7 0.467991
Target:  5'- uUCGGGugccGCGCgUGCCCCgAUCGaUCACCa -3'
miRNA:   3'- -AGCUCu---CGCG-GUGGGGgUAGC-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.