miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2887 5' -52 NC_001493.1 + 1003 0.66 0.981983
Target:  5'- gGCGAUgAUGAuggcuUCAugACGUG-CGCCGGu -3'
miRNA:   3'- -UGCUAgUGCU-----AGU--UGCACuGCGGCUu -5'
2887 5' -52 NC_001493.1 + 116557 0.66 0.981983
Target:  5'- gGCGAUgAUGAuggcuUCAugACGUG-CGCCGGu -3'
miRNA:   3'- -UGCUAgUGCU-----AGU--UGCACuGCGGCUu -5'
2887 5' -52 NC_001493.1 + 31117 0.66 0.979804
Target:  5'- -gGAUCGCGG---ACGUGAaggcCGCCGAc -3'
miRNA:   3'- ugCUAGUGCUaguUGCACU----GCGGCUu -5'
2887 5' -52 NC_001493.1 + 32421 0.66 0.979804
Target:  5'- cACGAUCGCGggUAugGagGACGUCa-- -3'
miRNA:   3'- -UGCUAGUGCuaGUugCa-CUGCGGcuu -5'
2887 5' -52 NC_001493.1 + 117507 0.66 0.977435
Target:  5'- gGCGGUgAcccaagguCGAUCGACGUGGCaaaGCUGAc -3'
miRNA:   3'- -UGCUAgU--------GCUAGUUGCACUG---CGGCUu -5'
2887 5' -52 NC_001493.1 + 55174 0.66 0.977435
Target:  5'- -gGGUCaACGAUCcGCGgugaGACGCCGc- -3'
miRNA:   3'- ugCUAG-UGCUAGuUGCa---CUGCGGCuu -5'
2887 5' -52 NC_001493.1 + 1953 0.66 0.977435
Target:  5'- gGCGGUgAcccaagguCGAUCGACGUGGCaaaGCUGAc -3'
miRNA:   3'- -UGCUAgU--------GCUAGUUGCACUG---CGGCUu -5'
2887 5' -52 NC_001493.1 + 39479 0.67 0.970327
Target:  5'- cUGAUCGgGAUCGgcgucagcgucacccGCGUcACGCCGGAu -3'
miRNA:   3'- uGCUAGUgCUAGU---------------UGCAcUGCGGCUU- -5'
2887 5' -52 NC_001493.1 + 47743 0.67 0.965896
Target:  5'- cGCGcgCACGAgcagCGGCuuuGUGACGCCc-- -3'
miRNA:   3'- -UGCuaGUGCUa---GUUG---CACUGCGGcuu -5'
2887 5' -52 NC_001493.1 + 89572 0.68 0.931599
Target:  5'- cACGGUCACGAgaccgaacgUCGugACG-GGCGCCGu- -3'
miRNA:   3'- -UGCUAGUGCU---------AGU--UGCaCUGCGGCuu -5'
2887 5' -52 NC_001493.1 + 65541 0.68 0.931599
Target:  5'- cUGAUUgAUGAUCAACaUGACGCCGu- -3'
miRNA:   3'- uGCUAG-UGCUAGUUGcACUGCGGCuu -5'
2887 5' -52 NC_001493.1 + 48345 0.69 0.920504
Target:  5'- cUGAaacgCACGGUgGACGcGACGCCGGc -3'
miRNA:   3'- uGCUa---GUGCUAgUUGCaCUGCGGCUu -5'
2887 5' -52 NC_001493.1 + 118866 0.69 0.920504
Target:  5'- aGCGAgugucgacUCuGCGAUgGAUGUgGACGCCGAGu -3'
miRNA:   3'- -UGCU--------AG-UGCUAgUUGCA-CUGCGGCUU- -5'
2887 5' -52 NC_001493.1 + 3312 0.69 0.920504
Target:  5'- aGCGAgugucgacUCuGCGAUgGAUGUgGACGCCGAGu -3'
miRNA:   3'- -UGCU--------AG-UGCUAgUUGCA-CUGCGGCUU- -5'
2887 5' -52 NC_001493.1 + 39649 0.7 0.888316
Target:  5'- gGCGugaCGCGggUGACGcUGACGCCGAu -3'
miRNA:   3'- -UGCua-GUGCuaGUUGC-ACUGCGGCUu -5'
2887 5' -52 NC_001493.1 + 64882 0.7 0.873719
Target:  5'- cCGGUCGCGAUgAACG-GAC-CCGAc -3'
miRNA:   3'- uGCUAGUGCUAgUUGCaCUGcGGCUu -5'
2887 5' -52 NC_001493.1 + 24689 0.72 0.797348
Target:  5'- uACGGUgccgugacaCACGAUCAACGUGAauCGCCu-- -3'
miRNA:   3'- -UGCUA---------GUGCUAGUUGCACU--GCGGcuu -5'
2887 5' -52 NC_001493.1 + 127806 0.74 0.666213
Target:  5'- aGCGAUCGCGGgcgcgguccauaUCAAUGUGAgGUCGGGg -3'
miRNA:   3'- -UGCUAGUGCU------------AGUUGCACUgCGGCUU- -5'
2887 5' -52 NC_001493.1 + 12252 0.74 0.666213
Target:  5'- aGCGAUCGCGGgcgcgguccauaUCAAUGUGAgGUCGGGg -3'
miRNA:   3'- -UGCUAGUGCU------------AGUUGCACUgCGGCUU- -5'
2887 5' -52 NC_001493.1 + 14252 1.06 0.009929
Target:  5'- cACGAUCACGAUCAACGUGACGCCGAAc -3'
miRNA:   3'- -UGCUAGUGCUAGUUGCACUGCGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.