miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28870 3' -49.8 NC_006146.1 + 42542 0.66 0.995891
Target:  5'- uACUGGGaGGGGGccuguCCGUcCGUCGGc -3'
miRNA:   3'- -UGAUUC-CCCCCu----GGUAcGUAGCU- -5'
28870 3' -49.8 NC_006146.1 + 50856 0.66 0.995891
Target:  5'- gGCUGGuGGGGGAUgAgagGCGUUGGc -3'
miRNA:   3'- -UGAUUcCCCCCUGgUa--CGUAGCU- -5'
28870 3' -49.8 NC_006146.1 + 67587 0.66 0.995177
Target:  5'- uACUuuGGGGGGcCCGUGgCGUUu- -3'
miRNA:   3'- -UGAuuCCCCCCuGGUAC-GUAGcu -5'
28870 3' -49.8 NC_006146.1 + 26287 0.66 0.995177
Target:  5'- cCUGGGuGGaGGGGCCG-GCAUCu- -3'
miRNA:   3'- uGAUUC-CC-CCCUGGUaCGUAGcu -5'
28870 3' -49.8 NC_006146.1 + 128741 0.66 0.995177
Target:  5'- --gGAGGGGGGugaguCCGUGCcaggcCGAc -3'
miRNA:   3'- ugaUUCCCCCCu----GGUACGua---GCU- -5'
28870 3' -49.8 NC_006146.1 + 38179 0.66 0.993444
Target:  5'- gGCUAcu-GGGGACCAccggGCAUCGu -3'
miRNA:   3'- -UGAUuccCCCCUGGUa---CGUAGCu -5'
28870 3' -49.8 NC_006146.1 + 44128 0.66 0.992408
Target:  5'- gGCgagGAGGGGGGGCaggaCGUGCGcaGAa -3'
miRNA:   3'- -UGa--UUCCCCCCUG----GUACGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 51461 0.66 0.992298
Target:  5'- gACUAgagguguggagauGGGcGGGGGCUgcgGCGUCGGg -3'
miRNA:   3'- -UGAU-------------UCC-CCCCUGGua-CGUAGCU- -5'
28870 3' -49.8 NC_006146.1 + 61738 0.67 0.991246
Target:  5'- gACUAAGGGccGGGACCGaaaccaagGCAgCGGc -3'
miRNA:   3'- -UGAUUCCC--CCCUGGUa-------CGUaGCU- -5'
28870 3' -49.8 NC_006146.1 + 166870 0.67 0.986903
Target:  5'- gGCggGAGGGGGGAgCGgaggGCGagGAg -3'
miRNA:   3'- -UGa-UUCCCCCCUgGUa---CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 145283 0.68 0.981064
Target:  5'- aGCUGAGGGGGG-CCucguagGUGUUGu -3'
miRNA:   3'- -UGAUUCCCCCCuGGua----CGUAGCu -5'
28870 3' -49.8 NC_006146.1 + 41994 0.68 0.973468
Target:  5'- cACUGGGGGGcGGACgA-GCA-CGAa -3'
miRNA:   3'- -UGAUUCCCC-CCUGgUaCGUaGCU- -5'
28870 3' -49.8 NC_006146.1 + 76390 0.69 0.967308
Target:  5'- cGCcGGGGGaGGGACCGgggGCGcCGAc -3'
miRNA:   3'- -UGaUUCCC-CCCUGGUa--CGUaGCU- -5'
28870 3' -49.8 NC_006146.1 + 157106 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 154028 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 150950 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 147872 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 144794 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 141716 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 57337 0.71 0.927207
Target:  5'- uCUGGGGGcGGGGCCccggGUGUCGGu -3'
miRNA:   3'- uGAUUCCC-CCCUGGua--CGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.