miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28870 3' -49.8 NC_006146.1 + 170113 0.71 0.909041
Target:  5'- ---cAGGGGGGGCCGgcgggGCGUCc- -3'
miRNA:   3'- ugauUCCCCCCUGGUa----CGUAGcu -5'
28870 3' -49.8 NC_006146.1 + 169178 0.73 0.822837
Target:  5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3'
miRNA:   3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5'
28870 3' -49.8 NC_006146.1 + 168246 0.73 0.822837
Target:  5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3'
miRNA:   3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5'
28870 3' -49.8 NC_006146.1 + 167314 0.73 0.822837
Target:  5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3'
miRNA:   3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5'
28870 3' -49.8 NC_006146.1 + 166870 0.67 0.986903
Target:  5'- gGCggGAGGGGGGAgCGgaggGCGagGAg -3'
miRNA:   3'- -UGa-UUCCCCCCUgGUa---CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 157106 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 154028 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 150950 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 147872 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 145283 0.68 0.981064
Target:  5'- aGCUGAGGGGGG-CCucguagGUGUUGu -3'
miRNA:   3'- -UGAUUCCCCCCuGGua----CGUAGCu -5'
28870 3' -49.8 NC_006146.1 + 144794 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 141716 0.69 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
28870 3' -49.8 NC_006146.1 + 134168 0.71 0.902448
Target:  5'- cCUAAGaGGGGGGCC-UGCAcgcCGAg -3'
miRNA:   3'- uGAUUC-CCCCCUGGuACGUa--GCU- -5'
28870 3' -49.8 NC_006146.1 + 128741 0.66 0.995177
Target:  5'- --gGAGGGGGGugaguCCGUGCcaggcCGAc -3'
miRNA:   3'- ugaUUCCCCCCu----GGUACGua---GCU- -5'
28870 3' -49.8 NC_006146.1 + 96257 0.71 0.902448
Target:  5'- aAUUGAGGGGGG--CGUGCAUCu- -3'
miRNA:   3'- -UGAUUCCCCCCugGUACGUAGcu -5'
28870 3' -49.8 NC_006146.1 + 93901 0.72 0.895591
Target:  5'- uGCggcAGGGGGGGCCA-GCA-CGGa -3'
miRNA:   3'- -UGau-UCCCCCCUGGUaCGUaGCU- -5'
28870 3' -49.8 NC_006146.1 + 92320 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 92290 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 92260 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 92230 0.71 0.927207
Target:  5'- uGCUGGGGGGcGGGCCcgGCcugUGGc -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGua-GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.