Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28870 | 3' | -49.8 | NC_006146.1 | + | 154028 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 92260 | 0.72 | 0.895591 |
Target: 5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3' miRNA: 3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 92290 | 0.72 | 0.895591 |
Target: 5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3' miRNA: 3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 92320 | 0.72 | 0.895591 |
Target: 5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3' miRNA: 3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 96257 | 0.71 | 0.902448 |
Target: 5'- aAUUGAGGGGGG--CGUGCAUCu- -3' miRNA: 3'- -UGAUUCCCCCCugGUACGUAGcu -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 92230 | 0.71 | 0.927207 |
Target: 5'- uGCUGGGGGGcGGGCCcgGCcugUGGc -3' miRNA: 3'- -UGAUUCCCC-CCUGGuaCGua-GCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 141716 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 144794 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 147872 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 150950 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 92200 | 0.72 | 0.895591 |
Target: 5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3' miRNA: 3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 157106 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 76390 | 0.69 | 0.967308 |
Target: 5'- cGCcGGGGGaGGGACCGgggGCGcCGAc -3' miRNA: 3'- -UGaUUCCC-CCCUGGUa--CGUaGCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 41994 | 0.68 | 0.973468 |
Target: 5'- cACUGGGGGGcGGACgA-GCA-CGAa -3' miRNA: 3'- -UGAUUCCCC-CCUGgUaCGUaGCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 61738 | 0.67 | 0.991246 |
Target: 5'- gACUAAGGGccGGGACCGaaaccaagGCAgCGGc -3' miRNA: 3'- -UGAUUCCC--CCCUGGUa-------CGUaGCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 44128 | 0.66 | 0.992408 |
Target: 5'- gGCgagGAGGGGGGGCaggaCGUGCGcaGAa -3' miRNA: 3'- -UGa--UUCCCCCCUG----GUACGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 38179 | 0.66 | 0.993444 |
Target: 5'- gGCUAcu-GGGGACCAccggGCAUCGu -3' miRNA: 3'- -UGAUuccCCCCUGGUa---CGUAGCu -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 67587 | 0.66 | 0.995177 |
Target: 5'- uACUuuGGGGGGcCCGUGgCGUUu- -3' miRNA: 3'- -UGAuuCCCCCCuGGUAC-GUAGcu -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 26287 | 0.66 | 0.995177 |
Target: 5'- cCUGGGuGGaGGGGCCG-GCAUCu- -3' miRNA: 3'- uGAUUC-CC-CCCUGGUaCGUAGcu -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 42542 | 0.66 | 0.995891 |
Target: 5'- uACUGGGaGGGGGccuguCCGUcCGUCGGc -3' miRNA: 3'- -UGAUUC-CCCCCu----GGUAcGUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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