miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28871 5' -47.7 NC_006146.1 + 63809 0.66 0.999831
Target:  5'- gGCUGaUGAugGCCACgACUAUCCa----- -3'
miRNA:   3'- aCGAC-ACU--UGGUG-UGAUGGGaaauuc -5'
28871 5' -47.7 NC_006146.1 + 42304 0.66 0.999722
Target:  5'- aGCgg-GAGCCGgAgUGCCCUgcGAGg -3'
miRNA:   3'- aCGacaCUUGGUgUgAUGGGAaaUUC- -5'
28871 5' -47.7 NC_006146.1 + 137410 0.66 0.999647
Target:  5'- gUGCUGgggucccggGGACCACGCcccuCCCUUc--- -3'
miRNA:   3'- -ACGACa--------CUUGGUGUGau--GGGAAauuc -5'
28871 5' -47.7 NC_006146.1 + 47202 0.66 0.999555
Target:  5'- aGCUGgacacgGAGaCgCugACUACCCUguUUGAGu -3'
miRNA:   3'- aCGACa-----CUU-G-GugUGAUGGGA--AAUUC- -5'
28871 5' -47.7 NC_006146.1 + 25863 0.67 0.999307
Target:  5'- gGCUGcGcGCuCACGCUGCCCg----- -3'
miRNA:   3'- aCGACaCuUG-GUGUGAUGGGaaauuc -5'
28871 5' -47.7 NC_006146.1 + 38279 0.68 0.998117
Target:  5'- cUGgaGcGGGCCACACUgccgGCCCUUUc-- -3'
miRNA:   3'- -ACgaCaCUUGGUGUGA----UGGGAAAuuc -5'
28871 5' -47.7 NC_006146.1 + 167170 0.68 0.997739
Target:  5'- gGCUGaaGGGCCACGCgGCCCccaGAGa -3'
miRNA:   3'- aCGACa-CUUGGUGUGaUGGGaaaUUC- -5'
28871 5' -47.7 NC_006146.1 + 6631 0.69 0.996209
Target:  5'- aGCUaGUGAACacccgggaccUACGCUGCCCUa---- -3'
miRNA:   3'- aCGA-CACUUG----------GUGUGAUGGGAaauuc -5'
28871 5' -47.7 NC_006146.1 + 87376 0.69 0.994779
Target:  5'- aGCUGUGGGCCcugauCAgaACCCUgcgccagGAGa -3'
miRNA:   3'- aCGACACUUGGu----GUgaUGGGAaa-----UUC- -5'
28871 5' -47.7 NC_006146.1 + 122835 0.69 0.993915
Target:  5'- aGCgaguacGUGGACCGCacGCUGCCCg--GGGc -3'
miRNA:   3'- aCGa-----CACUUGGUG--UGAUGGGaaaUUC- -5'
28871 5' -47.7 NC_006146.1 + 65821 0.7 0.991844
Target:  5'- aGCUGc--GCCagGCGCUcgaGCCCUUUGAGg -3'
miRNA:   3'- aCGACacuUGG--UGUGA---UGGGAAAUUC- -5'
28871 5' -47.7 NC_006146.1 + 128057 0.7 0.987734
Target:  5'- cGC-GUGGGCCugGCgGCCCUcgAGGc -3'
miRNA:   3'- aCGaCACUUGGugUGaUGGGAaaUUC- -5'
28871 5' -47.7 NC_006146.1 + 78753 0.76 0.870028
Target:  5'- aGCgUGUGAGCCAgGCuUGCCCUUUu-- -3'
miRNA:   3'- aCG-ACACUUGGUgUG-AUGGGAAAuuc -5'
28871 5' -47.7 NC_006146.1 + 65293 0.78 0.760941
Target:  5'- gGCUGUGGACCugGCUGCgCUg---- -3'
miRNA:   3'- aCGACACUUGGugUGAUGgGAaauuc -5'
28871 5' -47.7 NC_006146.1 + 36563 1.11 0.014114
Target:  5'- cUGCUGUGAACCACACUACCCUUUAAGg -3'
miRNA:   3'- -ACGACACUUGGUGUGAUGGGAAAUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.