miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28872 3' -50.4 NC_006146.1 + 156671 0.66 0.993055
Target:  5'- gUGUGGGcgagguuuggGGCGGcugggggUCGGGCUGGCcUGc -3'
miRNA:   3'- -AUACCUa---------UCGCCa------AGCCCGAUUGaAC- -5'
28872 3' -50.4 NC_006146.1 + 96826 0.66 0.993055
Target:  5'- gGUGGGgacgGGCGGgcaggUUGGGCccGCUUc -3'
miRNA:   3'- aUACCUa---UCGCCa----AGCCCGauUGAAc -5'
28872 3' -50.4 NC_006146.1 + 156926 0.67 0.988009
Target:  5'- -cUGGGUGGCGGcgcugaCGGGCUccGCUa- -3'
miRNA:   3'- auACCUAUCGCCaa----GCCCGAu-UGAac -5'
28872 3' -50.4 NC_006146.1 + 37651 0.67 0.988009
Target:  5'- cGUGGAcAGCGucccUgGGGCUGACUUu -3'
miRNA:   3'- aUACCUaUCGCca--AgCCCGAUUGAAc -5'
28872 3' -50.4 NC_006146.1 + 153606 0.67 0.986387
Target:  5'- -uUGGG-GGCGGcugggggUCGGGCUGGCcUGc -3'
miRNA:   3'- auACCUaUCGCCa------AGCCCGAUUGaAC- -5'
28872 3' -50.4 NC_006146.1 + 150528 0.67 0.986387
Target:  5'- -uUGGG-GGCGGcugggggUCGGGCUGGCcUGc -3'
miRNA:   3'- auACCUaUCGCCa------AGCCCGAUUGaAC- -5'
28872 3' -50.4 NC_006146.1 + 141294 0.67 0.986387
Target:  5'- -uUGGG-GGCGGcugggggUCGGGCUGGCcUGc -3'
miRNA:   3'- auACCUaUCGCCa------AGCCCGAUUGaAC- -5'
28872 3' -50.4 NC_006146.1 + 144372 0.67 0.986387
Target:  5'- -uUGGG-GGCGGcugggggUCGGGCUGGCcUGc -3'
miRNA:   3'- auACCUaUCGCCa------AGCCCGAUUGaAC- -5'
28872 3' -50.4 NC_006146.1 + 147450 0.67 0.986387
Target:  5'- -uUGGG-GGCGGcugggggUCGGGCUGGCcUGc -3'
miRNA:   3'- auACCUaUCGCCa------AGCCCGAUUGaAC- -5'
28872 3' -50.4 NC_006146.1 + 37313 0.68 0.980504
Target:  5'- aGUGGAUAGCGGUgcuaUGGGUa------ -3'
miRNA:   3'- aUACCUAUCGCCAa---GCCCGauugaac -5'
28872 3' -50.4 NC_006146.1 + 112115 0.68 0.975643
Target:  5'- gGUGGAgguggugcUGGUGGUggccUCGGuGCUGACaUUGg -3'
miRNA:   3'- aUACCU--------AUCGCCA----AGCC-CGAUUG-AAC- -5'
28872 3' -50.4 NC_006146.1 + 153523 0.69 0.969951
Target:  5'- cUGUGGAUggAGUGGggggcgUgGGGCU-GCUUGg -3'
miRNA:   3'- -AUACCUA--UCGCCa-----AgCCCGAuUGAAC- -5'
28872 3' -50.4 NC_006146.1 + 141531 0.69 0.959721
Target:  5'- -cUGGGaGGCuGGUUCugGGGCUgGACUUGg -3'
miRNA:   3'- auACCUaUCG-CCAAG--CCCGA-UUGAAC- -5'
28872 3' -50.4 NC_006146.1 + 150764 0.69 0.959721
Target:  5'- -cUGGGaGGCuGGUUCugGGGCUgGACUUGg -3'
miRNA:   3'- auACCUaUCG-CCAAG--CCCGA-UUGAAC- -5'
28872 3' -50.4 NC_006146.1 + 153842 0.69 0.959721
Target:  5'- -cUGGGaGGCuGGUUCugGGGCUgGACUUGg -3'
miRNA:   3'- auACCUaUCG-CCAAG--CCCGA-UUGAAC- -5'
28872 3' -50.4 NC_006146.1 + 156920 0.69 0.959721
Target:  5'- -cUGGGaGGCuGGUUCugGGGCUgGACUUGg -3'
miRNA:   3'- auACCUaUCG-CCAAG--CCCGA-UUGAAC- -5'
28872 3' -50.4 NC_006146.1 + 144609 0.69 0.959721
Target:  5'- -cUGGGaGGCuGGUUCugGGGCUgGACUUGg -3'
miRNA:   3'- auACCUaUCG-CCAAG--CCCGA-UUGAAC- -5'
28872 3' -50.4 NC_006146.1 + 147687 0.72 0.882011
Target:  5'- -cUGGGaGGCuGGUUCuGGGCUgGACUUGg -3'
miRNA:   3'- auACCUaUCG-CCAAG-CCCGA-UUGAAC- -5'
28872 3' -50.4 NC_006146.1 + 51179 0.74 0.825059
Target:  5'- gUGUGGAaGGgGGUcugCGGGCUGGCgUGg -3'
miRNA:   3'- -AUACCUaUCgCCAa--GCCCGAUUGaAC- -5'
28872 3' -50.4 NC_006146.1 + 36411 1.08 0.010349
Target:  5'- aUAUGGAUAGCGGUUCGGGCUAACUUGg -3'
miRNA:   3'- -AUACCUAUCGCCAAGCCCGAUUGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.