Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28873 | 3' | -46.5 | NC_006146.1 | + | 134590 | 0.76 | 0.902604 |
Target: 5'- cAGUUuuGAUUGUGGGggGAGGgCUCUc -3' miRNA: 3'- -UUAAucUUAACACUCuuCUCCgGAGA- -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 41029 | 0.67 | 0.999674 |
Target: 5'- ---cAGAGccGUGGGAGGAgGGCCUa- -3' miRNA: 3'- uuaaUCUUaaCACUCUUCU-CCGGAga -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 145278 | 0.66 | 0.999884 |
Target: 5'- -cUUGGAGc--UGAGggG-GGCCUCg -3' miRNA: 3'- uuAAUCUUaacACUCuuCuCCGGAGa -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 170374 | 0.66 | 0.999951 |
Target: 5'- ---gAGAGgccgUGUGuGGAGgccGGGCCUCc -3' miRNA: 3'- uuaaUCUUa---ACACuCUUC---UCCGGAGa -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 150076 | 0.66 | 0.999934 |
Target: 5'- ---gAGAGgcagGGGAAGAGGCCg-- -3' miRNA: 3'- uuaaUCUUaacaCUCUUCUCCGGaga -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 92770 | 0.69 | 0.998174 |
Target: 5'- ---gAGGAagGUGA--AGGGGCCUCUg -3' miRNA: 3'- uuaaUCUUaaCACUcuUCUCCGGAGA- -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 167579 | 0.66 | 0.999951 |
Target: 5'- ---gAGAGgccgUGUGuGGAGgccGGGCCUCc -3' miRNA: 3'- uuaaUCUUa---ACACuCUUC---UCCGGAGa -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 168511 | 0.66 | 0.999951 |
Target: 5'- ---gAGAGgccgUGUGuGGAGgccGGGCCUCc -3' miRNA: 3'- uuaaUCUUa---ACACuCUUC---UCCGGAGa -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 169443 | 0.66 | 0.999951 |
Target: 5'- ---gAGAGgccgUGUGuGGAGgccGGGCCUCc -3' miRNA: 3'- uuaaUCUUa---ACACuCUUC---UCCGGAGa -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 57054 | 0.69 | 0.997358 |
Target: 5'- ---cAGggUUGaggcGGGAGGGGGCCUg- -3' miRNA: 3'- uuaaUCuuAACa---CUCUUCUCCGGAga -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 45152 | 0.7 | 0.996259 |
Target: 5'- ---cGGGcuggGUGGGAcGGAGGCCUCg -3' miRNA: 3'- uuaaUCUuaa-CACUCU-UCUCCGGAGa -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 151268 | 0.7 | 0.992937 |
Target: 5'- ---gAGAGggGUGAGGAcuuuGGCCUCUg -3' miRNA: 3'- uuaaUCUUaaCACUCUUcu--CCGGAGA- -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 147597 | 0.69 | 0.998495 |
Target: 5'- ---gGGAGggGUGGGGAGuGGCCa-- -3' miRNA: 3'- uuaaUCUUaaCACUCUUCuCCGGaga -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 150675 | 0.69 | 0.998495 |
Target: 5'- ---gGGAGggGUGGGGAGuGGCCa-- -3' miRNA: 3'- uuaaUCUUaaCACUCUUCuCCGGaga -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 153752 | 0.69 | 0.998495 |
Target: 5'- ---gGGAGggGUGGGGAGuGGCCa-- -3' miRNA: 3'- uuaaUCUUaaCACUCUUCuCCGGaga -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 156830 | 0.69 | 0.998495 |
Target: 5'- ---gGGAGggGUGGGGAGuGGCCa-- -3' miRNA: 3'- uuaaUCUUaaCACUCUUCuCCGGaga -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 7299 | 0.67 | 0.999674 |
Target: 5'- -----------cGGGGAGAGGCCUCa -3' miRNA: 3'- uuaaucuuaacaCUCUUCUCCGGAGa -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 142991 | 0.66 | 0.999934 |
Target: 5'- ---gGGAAggcagGgagGAGAGGAGGCCg-- -3' miRNA: 3'- uuaaUCUUaa---Ca--CUCUUCUCCGGaga -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 146069 | 0.66 | 0.999934 |
Target: 5'- ---gGGAAggcagGgagGAGAGGAGGCCg-- -3' miRNA: 3'- uuaaUCUUaa---Ca--CUCUUCUCCGGaga -5' |
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28873 | 3' | -46.5 | NC_006146.1 | + | 155303 | 0.66 | 0.999934 |
Target: 5'- ---gGGAAggcagGgagGAGAGGAGGCCg-- -3' miRNA: 3'- uuaaUCUUaa---Ca--CUCUUCUCCGGaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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