miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28873 3' -46.5 NC_006146.1 + 147597 0.69 0.998495
Target:  5'- ---gGGAGggGUGGGGAGuGGCCa-- -3'
miRNA:   3'- uuaaUCUUaaCACUCUUCuCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 150675 0.69 0.998495
Target:  5'- ---gGGAGggGUGGGGAGuGGCCa-- -3'
miRNA:   3'- uuaaUCUUaaCACUCUUCuCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 153752 0.69 0.998495
Target:  5'- ---gGGAGggGUGGGGAGuGGCCa-- -3'
miRNA:   3'- uuaaUCUUaaCACUCUUCuCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 156830 0.69 0.998495
Target:  5'- ---gGGAGggGUGGGGAGuGGCCa-- -3'
miRNA:   3'- uuaaUCUUaaCACUCUUCuCCGGaga -5'
28873 3' -46.5 NC_006146.1 + 92770 0.69 0.998174
Target:  5'- ---gAGGAagGUGA--AGGGGCCUCUg -3'
miRNA:   3'- uuaaUCUUaaCACUcuUCUCCGGAGA- -5'
28873 3' -46.5 NC_006146.1 + 57054 0.69 0.997358
Target:  5'- ---cAGggUUGaggcGGGAGGGGGCCUg- -3'
miRNA:   3'- uuaaUCuuAACa---CUCUUCUCCGGAga -5'
28873 3' -46.5 NC_006146.1 + 45152 0.7 0.996259
Target:  5'- ---cGGGcuggGUGGGAcGGAGGCCUCg -3'
miRNA:   3'- uuaaUCUuaa-CACUCU-UCUCCGGAGa -5'
28873 3' -46.5 NC_006146.1 + 142034 0.7 0.992937
Target:  5'- ---gAGAGggGUGAGGAcuuuGGCCUCUg -3'
miRNA:   3'- uuaaUCUUaaCACUCUUcu--CCGGAGA- -5'
28873 3' -46.5 NC_006146.1 + 145112 0.7 0.992937
Target:  5'- ---gAGAGggGUGAGGAcuuuGGCCUCUg -3'
miRNA:   3'- uuaaUCUUaaCACUCUUcu--CCGGAGA- -5'
28873 3' -46.5 NC_006146.1 + 148190 0.7 0.992937
Target:  5'- ---gAGAGggGUGAGGAcuuuGGCCUCUg -3'
miRNA:   3'- uuaaUCUUaaCACUCUUcu--CCGGAGA- -5'
28873 3' -46.5 NC_006146.1 + 151268 0.7 0.992937
Target:  5'- ---gAGAGggGUGAGGAcuuuGGCCUCUg -3'
miRNA:   3'- uuaaUCUUaaCACUCUUcu--CCGGAGA- -5'
28873 3' -46.5 NC_006146.1 + 154346 0.7 0.992937
Target:  5'- ---gAGAGggGUGAGGAcuuuGGCCUCUg -3'
miRNA:   3'- uuaaUCUUaaCACUCUUcu--CCGGAGA- -5'
28873 3' -46.5 NC_006146.1 + 157424 0.7 0.992937
Target:  5'- ---gAGAGggGUGAGGAcuuuGGCCUCUg -3'
miRNA:   3'- uuaaUCUUaaCACUCUUcu--CCGGAGA- -5'
28873 3' -46.5 NC_006146.1 + 134590 0.76 0.902604
Target:  5'- cAGUUuuGAUUGUGGGggGAGGgCUCUc -3'
miRNA:   3'- -UUAAucUUAACACUCuuCUCCgGAGA- -5'
28873 3' -46.5 NC_006146.1 + 36272 1.07 0.028852
Target:  5'- aAAUUAGAAUUGUGAGAAGAGGCCUCUa -3'
miRNA:   3'- -UUAAUCUUAACACUCUUCUCCGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.