miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28873 5' -55.1 NC_006146.1 + 111456 0.66 0.910436
Target:  5'- cGGGGAGUCCUgCCCCCUGCc------- -3'
miRNA:   3'- -UCUCUCGGGA-GGGGGGUGuuaguuuu -5'
28873 5' -55.1 NC_006146.1 + 111041 0.66 0.904195
Target:  5'- uGAuGGGCgacaCCUCCUCCCugAGUCAc-- -3'
miRNA:   3'- uCU-CUCG----GGAGGGGGGugUUAGUuuu -5'
28873 5' -55.1 NC_006146.1 + 10956 0.67 0.897711
Target:  5'- aAGuuAGCCCagCCUgCCACAGUCAc-- -3'
miRNA:   3'- -UCucUCGGGa-GGGgGGUGUUAGUuuu -5'
28873 5' -55.1 NC_006146.1 + 122279 0.67 0.890989
Target:  5'- -cGGAGCCCg-CCCCCACGG-CAc-- -3'
miRNA:   3'- ucUCUCGGGagGGGGGUGUUaGUuuu -5'
28873 5' -55.1 NC_006146.1 + 2295 0.67 0.88403
Target:  5'- cGGAGccaGGCCCUCCUUCCgACAGUUc--- -3'
miRNA:   3'- -UCUC---UCGGGAGGGGGG-UGUUAGuuuu -5'
28873 5' -55.1 NC_006146.1 + 21860 0.67 0.88403
Target:  5'- aGGAGAGCagCCgagccaCCCCCACAAggGGAAg -3'
miRNA:   3'- -UCUCUCG--GGag----GGGGGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 162193 0.67 0.876841
Target:  5'- uGGGGuGCaaaCUCCgCCCCACAGguggcUCAGAu -3'
miRNA:   3'- -UCUCuCGg--GAGG-GGGGUGUU-----AGUUUu -5'
28873 5' -55.1 NC_006146.1 + 26627 0.67 0.869425
Target:  5'- gAGAGuGCCUcugaggUCUCCCCGCAucUCAAu- -3'
miRNA:   3'- -UCUCuCGGG------AGGGGGGUGUu-AGUUuu -5'
28873 5' -55.1 NC_006146.1 + 67500 0.68 0.861788
Target:  5'- aGGGGAGCacgaCgCCCCCCACuggCAGGc -3'
miRNA:   3'- -UCUCUCGg---GaGGGGGGUGuuaGUUUu -5'
28873 5' -55.1 NC_006146.1 + 56149 0.68 0.853937
Target:  5'- cGAGAGCaCCUCCCCgCgGCcGUCc--- -3'
miRNA:   3'- uCUCUCG-GGAGGGG-GgUGuUAGuuuu -5'
28873 5' -55.1 NC_006146.1 + 104233 0.68 0.835101
Target:  5'- gGGAGGuGCCCcgCCCCCCuCAGgauauagcacuugcUCAAGAg -3'
miRNA:   3'- -UCUCU-CGGGa-GGGGGGuGUU--------------AGUUUU- -5'
28873 5' -55.1 NC_006146.1 + 157316 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 154238 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 129876 0.68 0.829164
Target:  5'- ---aGGCCCUCCUCCCACGGcUCu--- -3'
miRNA:   3'- ucucUCGGGAGGGGGGUGUU-AGuuuu -5'
28873 5' -55.1 NC_006146.1 + 151160 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 148082 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 145004 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 141926 0.68 0.829164
Target:  5'- uGGAGGGCCCUgggaggCCCCuguCCGCGAggGAGAg -3'
miRNA:   3'- -UCUCUCGGGA------GGGG---GGUGUUagUUUU- -5'
28873 5' -55.1 NC_006146.1 + 105695 0.69 0.811707
Target:  5'- aAGGGAGgagcuauuUCCUCCCCCUGcCAGUCAc-- -3'
miRNA:   3'- -UCUCUC--------GGGAGGGGGGU-GUUAGUuuu -5'
28873 5' -55.1 NC_006146.1 + 131084 0.69 0.793576
Target:  5'- aGGGGuAGCCUaCCCCCCGCuAGUCc--- -3'
miRNA:   3'- -UCUC-UCGGGaGGGGGGUG-UUAGuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.