miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28874 3' -51 NC_006146.1 + 40152 0.66 0.99553
Target:  5'- aCAGggcGGCGUCuuCUCCGGGgaagagcccGCCGCc -3'
miRNA:   3'- gGUUa--UCGUAGugGAGGUCCa--------UGGUG- -5'
28874 3' -51 NC_006146.1 + 120062 0.66 0.99553
Target:  5'- cCCAccAGCcuggaCACCgCCAGGaGCCGCu -3'
miRNA:   3'- -GGUuaUCGua---GUGGaGGUCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 78811 0.66 0.99553
Target:  5'- cCCAGcAGCA--GCC-CCAGGccggGCCGCc -3'
miRNA:   3'- -GGUUaUCGUagUGGaGGUCCa---UGGUG- -5'
28874 3' -51 NC_006146.1 + 138251 0.66 0.99553
Target:  5'- cCCGuu-GgGUUACCUgCAGGUGuguCCACa -3'
miRNA:   3'- -GGUuauCgUAGUGGAgGUCCAU---GGUG- -5'
28874 3' -51 NC_006146.1 + 103727 0.66 0.994791
Target:  5'- cCCAAggAGCAguuCCUCCcGGacGCCGCg -3'
miRNA:   3'- -GGUUa-UCGUaguGGAGGuCCa-UGGUG- -5'
28874 3' -51 NC_006146.1 + 80950 0.66 0.994791
Target:  5'- aCCAccGGCAcugCuuCCUCCA-GUGCCACc -3'
miRNA:   3'- -GGUuaUCGUa--Gu-GGAGGUcCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 73644 0.66 0.994791
Target:  5'- gCCAGUGGCAcaaCACCgagCCA---GCCACc -3'
miRNA:   3'- -GGUUAUCGUa--GUGGa--GGUccaUGGUG- -5'
28874 3' -51 NC_006146.1 + 49231 0.66 0.994791
Target:  5'- gUCGAU-GCccuccugCACCUCCGGGU-CCAg -3'
miRNA:   3'- -GGUUAuCGua-----GUGGAGGUCCAuGGUg -5'
28874 3' -51 NC_006146.1 + 104770 0.66 0.994791
Target:  5'- aCGGUGGCGU--UCUCCccGUACCAUa -3'
miRNA:   3'- gGUUAUCGUAguGGAGGucCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 129758 0.66 0.993957
Target:  5'- aCCAGUccuCGUC-CCUCCAGGgAgCGCg -3'
miRNA:   3'- -GGUUAuc-GUAGuGGAGGUCCaUgGUG- -5'
28874 3' -51 NC_006146.1 + 2728 0.66 0.993957
Target:  5'- gCAAUAGCAUCGUCgCUugguuGGUACUACc -3'
miRNA:   3'- gGUUAUCGUAGUGGaGGu----CCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 156350 0.66 0.993018
Target:  5'- cCCGAaAGCGgcccagCAgCUCCAGGgcCCGg -3'
miRNA:   3'- -GGUUaUCGUa-----GUgGAGGUCCauGGUg -5'
28874 3' -51 NC_006146.1 + 81766 0.66 0.993018
Target:  5'- gCAugagAGCAUgGCCgcccggucUCCggGGGUGCCACc -3'
miRNA:   3'- gGUua--UCGUAgUGG--------AGG--UCCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 122967 0.66 0.993018
Target:  5'- aCCAAgagggAGCGggacgaUCuCCUCCAGG--CCACg -3'
miRNA:   3'- -GGUUa----UCGU------AGuGGAGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 60042 0.66 0.991967
Target:  5'- cCCGAgacgcAGCGUC-CCUCUgaucGGGcGCCGCc -3'
miRNA:   3'- -GGUUa----UCGUAGuGGAGG----UCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 113041 0.66 0.991967
Target:  5'- gCCA--GGaCGUCgGCCUCgGGGU-CCACg -3'
miRNA:   3'- -GGUuaUC-GUAG-UGGAGgUCCAuGGUG- -5'
28874 3' -51 NC_006146.1 + 24384 0.66 0.991628
Target:  5'- uCCAGggcgcGGCGccuUCGCuCUCCGGGUuuacguuccaggagGCCGCc -3'
miRNA:   3'- -GGUUa----UCGU---AGUG-GAGGUCCA--------------UGGUG- -5'
28874 3' -51 NC_006146.1 + 55036 0.67 0.990793
Target:  5'- cCCAGgccaAGCucaagauUCACC-CCGGGgugGCCAUg -3'
miRNA:   3'- -GGUUa---UCGu------AGUGGaGGUCCa--UGGUG- -5'
28874 3' -51 NC_006146.1 + 77438 0.67 0.990793
Target:  5'- uCCGAgacuaUGGCAUCAgCUCCAaGcugGCCAUg -3'
miRNA:   3'- -GGUU-----AUCGUAGUgGAGGUcCa--UGGUG- -5'
28874 3' -51 NC_006146.1 + 136860 0.67 0.990793
Target:  5'- cCCGGccGGCAUagGCC-CCGGG-ACCACg -3'
miRNA:   3'- -GGUUa-UCGUAg-UGGaGGUCCaUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.