miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28874 3' -51 NC_006146.1 + 32615 1.11 0.006579
Target:  5'- cCCAAUAGCAUCACCUCCAGGUACCACc -3'
miRNA:   3'- -GGUUAUCGUAGUGGAGGUCCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 136445 1.03 0.021157
Target:  5'- cCCAAUAGCAUgACCUCCAGGUACCACc -3'
miRNA:   3'- -GGUUAUCGUAgUGGAGGUCCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 99193 0.88 0.186124
Target:  5'- aCCAgGUGGCGUcCGCCUCCAGGgagGCCGCg -3'
miRNA:   3'- -GGU-UAUCGUA-GUGGAGGUCCa--UGGUG- -5'
28874 3' -51 NC_006146.1 + 18348 0.8 0.495737
Target:  5'- aCCAGUaaggguaGGUAacuUCACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA-------UCGU---AGUGGAGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 15270 0.8 0.495737
Target:  5'- aCCAGUaaggguaGGUAacuUCACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA-------UCGU---AGUGGAGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 21426 0.8 0.495737
Target:  5'- aCCAGUaaggguaGGUAacuUCACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA-------UCGU---AGUGGAGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 24504 0.8 0.495737
Target:  5'- aCCAGUaaggguaGGUAacuUCACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA-------UCGU---AGUGGAGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 27582 0.8 0.495737
Target:  5'- aCCAGUaaggguaGGUAacuUCACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA-------UCGU---AGUGGAGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 104029 0.77 0.662531
Target:  5'- uCCAGcAGCAcCACCUUCGGG-GCCGCa -3'
miRNA:   3'- -GGUUaUCGUaGUGGAGGUCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 66651 0.74 0.793391
Target:  5'- aCGAUAGCAUgGCCUCUGGGUAg--- -3'
miRNA:   3'- gGUUAUCGUAgUGGAGGUCCAUggug -5'
28874 3' -51 NC_006146.1 + 48477 0.74 0.811752
Target:  5'- uCCGAUAGCAUgGCggCCAGGauCCGCg -3'
miRNA:   3'- -GGUUAUCGUAgUGgaGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 160727 0.74 0.811752
Target:  5'- gCCuGUGGCAUUAcuuCCUCCAGGUAaaACu -3'
miRNA:   3'- -GGuUAUCGUAGU---GGAGGUCCAUggUG- -5'
28874 3' -51 NC_006146.1 + 117052 0.73 0.828555
Target:  5'- ----cAGCGUCgccuaccGCCUCCGGG-ACCACa -3'
miRNA:   3'- gguuaUCGUAG-------UGGAGGUCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 102693 0.73 0.854474
Target:  5'- cCCAAgaAGCGUCugACCUCCcGGaGCCGCu -3'
miRNA:   3'- -GGUUa-UCGUAG--UGGAGGuCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 74747 0.72 0.870121
Target:  5'- cCCAGUgAGCca-GCCUCCGGGggGCCAa -3'
miRNA:   3'- -GGUUA-UCGuagUGGAGGUCCa-UGGUg -5'
28874 3' -51 NC_006146.1 + 62338 0.72 0.870121
Target:  5'- gCCGucAGC-UCGCCUCUGGGUagauaGCCACc -3'
miRNA:   3'- -GGUuaUCGuAGUGGAGGUCCA-----UGGUG- -5'
28874 3' -51 NC_006146.1 + 55390 0.72 0.877607
Target:  5'- gCAAUGGCAcgCugCUCCGGG-ACCcCa -3'
miRNA:   3'- gGUUAUCGUa-GugGAGGUCCaUGGuG- -5'
28874 3' -51 NC_006146.1 + 1834 0.72 0.877607
Target:  5'- --cAUGGCGgggCACagCCGGGUGCCACa -3'
miRNA:   3'- gguUAUCGUa--GUGgaGGUCCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 170760 0.72 0.891877
Target:  5'- aCCAcgGGCA--GCCaUCCAGGcGCCAUa -3'
miRNA:   3'- -GGUuaUCGUagUGG-AGGUCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 102078 0.71 0.898651
Target:  5'- aCCAGUGGCcaaCAUaCUCCGGGUuCCAUg -3'
miRNA:   3'- -GGUUAUCGua-GUG-GAGGUCCAuGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.