miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28874 3' -51 NC_006146.1 + 77438 0.67 0.990793
Target:  5'- uCCGAgacuaUGGCAUCAgCUCCAaGcugGCCAUg -3'
miRNA:   3'- -GGUU-----AUCGUAGUgGAGGUcCa--UGGUG- -5'
28874 3' -51 NC_006146.1 + 136860 0.67 0.990793
Target:  5'- cCCGGccGGCAUagGCC-CCGGG-ACCACg -3'
miRNA:   3'- -GGUUa-UCGUAg-UGGaGGUCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 53888 0.67 0.989489
Target:  5'- cCCGuagGGCGUaGCCcaggUCCAGGgcCCGCu -3'
miRNA:   3'- -GGUua-UCGUAgUGG----AGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 52080 0.67 0.988044
Target:  5'- gCCAGggaggcgGGCAUCAagUUCgAGGUGCUGCu -3'
miRNA:   3'- -GGUUa------UCGUAGUg-GAGgUCCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 55337 0.67 0.988044
Target:  5'- cUCGAguagGGCcgcgGUCGCCUCCAGcccccGCCACc -3'
miRNA:   3'- -GGUUa---UCG----UAGUGGAGGUCca---UGGUG- -5'
28874 3' -51 NC_006146.1 + 54022 0.67 0.988044
Target:  5'- aCCA--GGUggCGCCUCCggAGGgcgGCCAUg -3'
miRNA:   3'- -GGUuaUCGuaGUGGAGG--UCCa--UGGUG- -5'
28874 3' -51 NC_006146.1 + 123638 0.67 0.988044
Target:  5'- gCAGgaccuCGUCACCcgggCCAGGgGCCACg -3'
miRNA:   3'- gGUUauc--GUAGUGGa---GGUCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 116870 0.67 0.988044
Target:  5'- gCCGAcaUGGCcgC-CCUCCggAGGcGCCACc -3'
miRNA:   3'- -GGUU--AUCGuaGuGGAGG--UCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 42377 0.67 0.986451
Target:  5'- gCCAGggugGGCGaggggCGCC-CCAGG-GCCACc -3'
miRNA:   3'- -GGUUa---UCGUa----GUGGaGGUCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 23738 0.67 0.986451
Target:  5'- gCCGGUcuGCGcCGCCgCCGGGUcaacuGCCGCg -3'
miRNA:   3'- -GGUUAu-CGUaGUGGaGGUCCA-----UGGUG- -5'
28874 3' -51 NC_006146.1 + 62855 0.67 0.9847
Target:  5'- gCCGGaGGUucucuUCACCaguccgUCCAGGgGCCACa -3'
miRNA:   3'- -GGUUaUCGu----AGUGG------AGGUCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 99438 0.68 0.982781
Target:  5'- uCCAggAGCAugaggcccUCGCUccucggcgCCAGGUGCCAa -3'
miRNA:   3'- -GGUuaUCGU--------AGUGGa-------GGUCCAUGGUg -5'
28874 3' -51 NC_006146.1 + 155989 0.68 0.982781
Target:  5'- uCCGAgAGCuccgcCACCUCCGGGgg-CACg -3'
miRNA:   3'- -GGUUaUCGua---GUGGAGGUCCaugGUG- -5'
28874 3' -51 NC_006146.1 + 48864 0.68 0.982781
Target:  5'- gCGA-AGcCGUCgGCCUCCAGGcGCCAg -3'
miRNA:   3'- gGUUaUC-GUAG-UGGAGGUCCaUGGUg -5'
28874 3' -51 NC_006146.1 + 67598 0.68 0.980686
Target:  5'- gCCcGUGGCGUUugGCCUCC-GGUGCgAg -3'
miRNA:   3'- -GGuUAUCGUAG--UGGAGGuCCAUGgUg -5'
28874 3' -51 NC_006146.1 + 32092 0.68 0.978407
Target:  5'- cCCAAUAGC-UCACCaaccCCGGGc-CCAUc -3'
miRNA:   3'- -GGUUAUCGuAGUGGa---GGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 126630 0.68 0.978407
Target:  5'- gUCGGUGGgCA-CACC-CCGGGgcCCGCa -3'
miRNA:   3'- -GGUUAUC-GUaGUGGaGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 82716 0.68 0.978407
Target:  5'- cUCAAUAGCugagaCACCUCCcGG-GCCAg -3'
miRNA:   3'- -GGUUAUCGua---GUGGAGGuCCaUGGUg -5'
28874 3' -51 NC_006146.1 + 160230 0.68 0.975935
Target:  5'- cCCGcgGGUAUCGCC-CCGGGccuccccgucCCACa -3'
miRNA:   3'- -GGUuaUCGUAGUGGaGGUCCau--------GGUG- -5'
28874 3' -51 NC_006146.1 + 163238 0.68 0.973261
Target:  5'- -gGGUAGCG-CugCUCCAGGaACCcCg -3'
miRNA:   3'- ggUUAUCGUaGugGAGGUCCaUGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.