miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28874 3' -51 NC_006146.1 + 1834 0.72 0.877607
Target:  5'- --cAUGGCGgggCACagCCGGGUGCCACa -3'
miRNA:   3'- gguUAUCGUa--GUGgaGGUCCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 2728 0.66 0.993957
Target:  5'- gCAAUAGCAUCGUCgCUugguuGGUACUACc -3'
miRNA:   3'- gGUUAUCGUAGUGGaGGu----CCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 9786 0.71 0.923263
Target:  5'- cCCAAUgAGCGUCugCuccucUCCAGGgcCCAg -3'
miRNA:   3'- -GGUUA-UCGUAGugG-----AGGUCCauGGUg -5'
28874 3' -51 NC_006146.1 + 10259 0.69 0.956629
Target:  5'- cCCuaaGGCuUCGCUUgCgCAGGUGCCACa -3'
miRNA:   3'- -GGuuaUCGuAGUGGA-G-GUCCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 15270 0.8 0.495737
Target:  5'- aCCAGUaaggguaGGUAacuUCACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA-------UCGU---AGUGGAGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 18348 0.8 0.495737
Target:  5'- aCCAGUaaggguaGGUAacuUCACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA-------UCGU---AGUGGAGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 21426 0.8 0.495737
Target:  5'- aCCAGUaaggguaGGUAacuUCACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA-------UCGU---AGUGGAGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 23586 0.67 0.990793
Target:  5'- cCCAGcuGCGUC--UUCCAGGUGCaCGCu -3'
miRNA:   3'- -GGUUauCGUAGugGAGGUCCAUG-GUG- -5'
28874 3' -51 NC_006146.1 + 23738 0.67 0.986451
Target:  5'- gCCGGUcuGCGcCGCCgCCGGGUcaacuGCCGCg -3'
miRNA:   3'- -GGUUAu-CGUaGUGGaGGUCCA-----UGGUG- -5'
28874 3' -51 NC_006146.1 + 24384 0.66 0.991628
Target:  5'- uCCAGggcgcGGCGccuUCGCuCUCCGGGUuuacguuccaggagGCCGCc -3'
miRNA:   3'- -GGUUa----UCGU---AGUG-GAGGUCCA--------------UGGUG- -5'
28874 3' -51 NC_006146.1 + 24504 0.8 0.495737
Target:  5'- aCCAGUaaggguaGGUAacuUCACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA-------UCGU---AGUGGAGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 27582 0.8 0.495737
Target:  5'- aCCAGUaaggguaGGUAacuUCACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA-------UCGU---AGUGGAGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 32092 0.68 0.978407
Target:  5'- cCCAAUAGC-UCACCaaccCCGGGc-CCAUc -3'
miRNA:   3'- -GGUUAUCGuAGUGGa---GGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 32615 1.11 0.006579
Target:  5'- cCCAAUAGCAUCACCUCCAGGUACCACc -3'
miRNA:   3'- -GGUUAUCGUAGUGGAGGUCCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 37013 0.69 0.963617
Target:  5'- aUCAAUgGGCAgcuauauUCACCUUacGGUGCCGCa -3'
miRNA:   3'- -GGUUA-UCGU-------AGUGGAGguCCAUGGUG- -5'
28874 3' -51 NC_006146.1 + 40152 0.66 0.99553
Target:  5'- aCAGggcGGCGUCuuCUCCGGGgaagagcccGCCGCc -3'
miRNA:   3'- gGUUa--UCGUAGugGAGGUCCa--------UGGUG- -5'
28874 3' -51 NC_006146.1 + 42377 0.67 0.986451
Target:  5'- gCCAGggugGGCGaggggCGCC-CCAGG-GCCACc -3'
miRNA:   3'- -GGUUa---UCGUa----GUGGaGGUCCaUGGUG- -5'
28874 3' -51 NC_006146.1 + 42563 0.71 0.911459
Target:  5'- uCCGucGGCuUCAUCUCCAGG-GCCAg -3'
miRNA:   3'- -GGUuaUCGuAGUGGAGGUCCaUGGUg -5'
28874 3' -51 NC_006146.1 + 48477 0.74 0.811752
Target:  5'- uCCGAUAGCAUgGCggCCAGGauCCGCg -3'
miRNA:   3'- -GGUUAUCGUAgUGgaGGUCCauGGUG- -5'
28874 3' -51 NC_006146.1 + 48864 0.68 0.982781
Target:  5'- gCGA-AGcCGUCgGCCUCCAGGcGCCAg -3'
miRNA:   3'- gGUUaUC-GUAG-UGGAGGUCCaUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.