miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28874 5' -52.7 NC_006146.1 + 161417 0.66 0.990032
Target:  5'- aGGCcugUGCCagGCGGGUGugGCCCcGCGGg -3'
miRNA:   3'- cCUGu--GUGGa-CGUCCAU--UGGGuUGCC- -5'
28874 5' -52.7 NC_006146.1 + 27314 0.66 0.990032
Target:  5'- aGACAUGCCUGCuucaacUGGCCCuccaaaaacAGCGGg -3'
miRNA:   3'- cCUGUGUGGACGucc---AUUGGG---------UUGCC- -5'
28874 5' -52.7 NC_006146.1 + 61433 0.66 0.990032
Target:  5'- cGGGCACgGCCggGCugaucagcuuugAGGUGucuCCCGACGc -3'
miRNA:   3'- -CCUGUG-UGGa-CG------------UCCAUu--GGGUUGCc -5'
28874 5' -52.7 NC_006146.1 + 120201 0.66 0.990032
Target:  5'- cGGcuuuCAgGCCUGCcGGUcgguGCCUGugGGg -3'
miRNA:   3'- -CCu---GUgUGGACGuCCAu---UGGGUugCC- -5'
28874 5' -52.7 NC_006146.1 + 123069 0.66 0.988683
Target:  5'- gGGACGCGuCCUGCGGGgccauGuuUAGCa- -3'
miRNA:   3'- -CCUGUGU-GGACGUCCau---UggGUUGcc -5'
28874 5' -52.7 NC_006146.1 + 138256 0.66 0.988683
Target:  5'- uGGguUACCUGCAGGUGugUCcACaGGu -3'
miRNA:   3'- cCUguGUGGACGUCCAUugGGuUG-CC- -5'
28874 5' -52.7 NC_006146.1 + 109676 0.66 0.988683
Target:  5'- aGAC-CACCUcGCAguccGGU-ACCCGAuCGGg -3'
miRNA:   3'- cCUGuGUGGA-CGU----CCAuUGGGUU-GCC- -5'
28874 5' -52.7 NC_006146.1 + 159667 0.66 0.988683
Target:  5'- gGGACccuaaAgCUGCAGaUGGCCCcACGGu -3'
miRNA:   3'- -CCUGug---UgGACGUCcAUUGGGuUGCC- -5'
28874 5' -52.7 NC_006146.1 + 60136 0.66 0.988683
Target:  5'- gGGAgGgACCUGguGGggggugUGugCCAGgGGg -3'
miRNA:   3'- -CCUgUgUGGACguCC------AUugGGUUgCC- -5'
28874 5' -52.7 NC_006146.1 + 130860 0.66 0.988683
Target:  5'- cGGACACGCCggagucgGCuacGGcc-CCCAGCaGGc -3'
miRNA:   3'- -CCUGUGUGGa------CGu--CCauuGGGUUG-CC- -5'
28874 5' -52.7 NC_006146.1 + 114206 0.66 0.988683
Target:  5'- aGACGCcggGCCggaGgGGGUAgcaGCCCGGCGa -3'
miRNA:   3'- cCUGUG---UGGa--CgUCCAU---UGGGUUGCc -5'
28874 5' -52.7 NC_006146.1 + 133402 0.66 0.987196
Target:  5'- cGGACccuuaACACCUGUccuguguuuguuGGGUAGCCa---GGg -3'
miRNA:   3'- -CCUG-----UGUGGACG------------UCCAUUGGguugCC- -5'
28874 5' -52.7 NC_006146.1 + 59032 0.66 0.987196
Target:  5'- -aACGCACCgcugGC-GGUGaggGCgCAGCGGg -3'
miRNA:   3'- ccUGUGUGGa---CGuCCAU---UGgGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 157048 0.66 0.987196
Target:  5'- uGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- cCUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 153970 0.66 0.987196
Target:  5'- uGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- cCUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 150892 0.66 0.987196
Target:  5'- uGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- cCUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 147814 0.66 0.987196
Target:  5'- uGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- cCUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 144736 0.66 0.987196
Target:  5'- uGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- cCUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 141659 0.66 0.987196
Target:  5'- uGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- cCUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 43270 0.66 0.986234
Target:  5'- aGGCACAgggcggccuggagguCCgGCAGGU-GCCUAGCGu -3'
miRNA:   3'- cCUGUGU---------------GGaCGUCCAuUGGGUUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.