miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28874 5' -52.7 NC_006146.1 + 451 0.71 0.863802
Target:  5'- gGGACACGCCccCGGGUccCCCGGCa- -3'
miRNA:   3'- -CCUGUGUGGacGUCCAuuGGGUUGcc -5'
28874 5' -52.7 NC_006146.1 + 876 0.69 0.938422
Target:  5'- gGGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- -CCUGugUGGaCGUCCaUUGggUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 1382 0.71 0.863802
Target:  5'- gGGACACGCCccCGGGUccCCCGGCa- -3'
miRNA:   3'- -CCUGUGUGGacGUCCAuuGGGUUGcc -5'
28874 5' -52.7 NC_006146.1 + 1808 0.69 0.938422
Target:  5'- gGGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- -CCUGugUGGaCGUCCaUUGggUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 2314 0.71 0.863802
Target:  5'- gGGACACGCCccCGGGUccCCCGGCa- -3'
miRNA:   3'- -CCUGUGUGGacGUCCAuuGGGUUGcc -5'
28874 5' -52.7 NC_006146.1 + 2740 0.69 0.938422
Target:  5'- gGGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- -CCUGugUGGaCGUCCaUUGggUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 3246 0.71 0.863802
Target:  5'- gGGACACGCCccCGGGUccCCCGGCa- -3'
miRNA:   3'- -CCUGUGUGGacGUCCAuuGGGUUGcc -5'
28874 5' -52.7 NC_006146.1 + 3672 0.69 0.938422
Target:  5'- gGGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- -CCUGugUGGaCGUCCaUUGggUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 12786 0.73 0.796978
Target:  5'- uGGACGCGgcCCUGCAGGggcgGACguacggaCGGCGGc -3'
miRNA:   3'- -CCUGUGU--GGACGUCCa---UUGg------GUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 13538 0.66 0.983775
Target:  5'- uGGACAggaacCugCUGCAGGc-GCCgGGCGc -3'
miRNA:   3'- -CCUGU-----GugGACGUCCauUGGgUUGCc -5'
28874 5' -52.7 NC_006146.1 + 14317 0.72 0.848221
Target:  5'- uGGCGCACCUGCuGGagAACUCAcgcagggccguuGCGGc -3'
miRNA:   3'- cCUGUGUGGACGuCCa-UUGGGU------------UGCC- -5'
28874 5' -52.7 NC_006146.1 + 15033 0.66 0.985563
Target:  5'- aGGgGCGCCUGgcCAGG--GCCCGcCGGg -3'
miRNA:   3'- cCUgUGUGGAC--GUCCauUGGGUuGCC- -5'
28874 5' -52.7 NC_006146.1 + 15090 0.67 0.979704
Target:  5'- uGACuCACCUGUuugacucGGUGGCCCccagggccaccgAGCGGc -3'
miRNA:   3'- cCUGuGUGGACGu------CCAUUGGG------------UUGCC- -5'
28874 5' -52.7 NC_006146.1 + 27314 0.66 0.990032
Target:  5'- aGACAUGCCUGCuucaacUGGCCCuccaaaaacAGCGGg -3'
miRNA:   3'- cCUGUGUGGACGucc---AUUGGG---------UUGCC- -5'
28874 5' -52.7 NC_006146.1 + 32649 1.14 0.003712
Target:  5'- uGGACACACCUGCAGGUAACCCAACGGg -3'
miRNA:   3'- -CCUGUGUGGACGUCCAUUGGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 33134 0.67 0.979924
Target:  5'- cGGGC-CGCUgccccgcuccgggugGgGGGUGGCCCGGCuGGg -3'
miRNA:   3'- -CCUGuGUGGa--------------CgUCCAUUGGGUUG-CC- -5'
28874 5' -52.7 NC_006146.1 + 33258 0.67 0.979924
Target:  5'- cGGGC-CGCUgccccgcuccgggugGgGGGUGGCCCGGCuGGg -3'
miRNA:   3'- -CCUGuGUGGa--------------CgUCCAUUGGGUUG-CC- -5'
28874 5' -52.7 NC_006146.1 + 34426 0.67 0.974917
Target:  5'- uGGguUACCUGCAGGUGugUCAccaGGu -3'
miRNA:   3'- cCUguGUGGACGUCCAUugGGUug-CC- -5'
28874 5' -52.7 NC_006146.1 + 35963 0.72 0.848221
Target:  5'- cGGGCugACCUgccguugcGCAGG--GCCCAaugucaGCGGg -3'
miRNA:   3'- -CCUGugUGGA--------CGUCCauUGGGU------UGCC- -5'
28874 5' -52.7 NC_006146.1 + 38919 0.69 0.938422
Target:  5'- -aACACACCUGCAGuGUu-CCCAAg-- -3'
miRNA:   3'- ccUGUGUGGACGUC-CAuuGGGUUgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.