miRNA display CGI


Results 1 - 20 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28874 5' -52.7 NC_006146.1 + 167304 0.84 0.277105
Target:  5'- gGGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- -CCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 50555 0.7 0.922958
Target:  5'- gGGugGgCACCUGCAGGUuuCCaGACc- -3'
miRNA:   3'- -CCugU-GUGGACGUCCAuuGGgUUGcc -5'
28874 5' -52.7 NC_006146.1 + 155331 0.7 0.922958
Target:  5'- cGACGCGCCUGUccucccAGG-GACCCGagACGa -3'
miRNA:   3'- cCUGUGUGGACG------UCCaUUGGGU--UGCc -5'
28874 5' -52.7 NC_006146.1 + 120201 0.66 0.990032
Target:  5'- cGGcuuuCAgGCCUGCcGGUcgguGCCUGugGGg -3'
miRNA:   3'- -CCu---GUgUGGACGuCCAu---UGGGUugCC- -5'
28874 5' -52.7 NC_006146.1 + 57378 0.73 0.787863
Target:  5'- cGGugGCGCCgGUGGGcUGGCCCcGCGa -3'
miRNA:   3'- -CCugUGUGGaCGUCC-AUUGGGuUGCc -5'
28874 5' -52.7 NC_006146.1 + 42163 0.73 0.805942
Target:  5'- cGGACACccCCUGCGGG-AAUCCAAuccagUGGa -3'
miRNA:   3'- -CCUGUGu-GGACGUCCaUUGGGUU-----GCC- -5'
28874 5' -52.7 NC_006146.1 + 129129 0.72 0.83185
Target:  5'- cGGGCGC-CCgggcGCAGGgccUCCGGCGGg -3'
miRNA:   3'- -CCUGUGuGGa---CGUCCauuGGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 146061 0.71 0.856113
Target:  5'- ---aGCACCUGCuuguuGGUGACCCGgACGu -3'
miRNA:   3'- ccugUGUGGACGu----CCAUUGGGU-UGCc -5'
28874 5' -52.7 NC_006146.1 + 149977 0.71 0.885581
Target:  5'- gGGGCcaGgGCCUGCAGGUcGGCCgGACu- -3'
miRNA:   3'- -CCUG--UgUGGACGUCCA-UUGGgUUGcc -5'
28874 5' -52.7 NC_006146.1 + 43354 0.7 0.922958
Target:  5'- aGGCGCAgcCCgugGCaggGGGUGGCUUAGCGGg -3'
miRNA:   3'- cCUGUGU--GGa--CG---UCCAUUGGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 111129 0.7 0.905331
Target:  5'- cGACAC-CCUcaaccccCAGGUGGCCgGGCGGc -3'
miRNA:   3'- cCUGUGuGGAc------GUCCAUUGGgUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 54791 0.71 0.882792
Target:  5'- gGGAgCGCGCCUuggGCAGcucguuggagagGACCCGGCGGa -3'
miRNA:   3'- -CCU-GUGUGGA---CGUCca----------UUGGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 168236 0.84 0.277105
Target:  5'- gGGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- -CCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 155809 0.7 0.911445
Target:  5'- gGGGC-CACCgagucaaaCAGGUGAgUCAGCGGa -3'
miRNA:   3'- -CCUGuGUGGac------GUCCAUUgGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 169168 0.84 0.277105
Target:  5'- gGGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- -CCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 154683 0.71 0.861517
Target:  5'- gGGGCGCugCUGCuggguGGUcugcgcccagaugcAGCCCAccaggGCGGc -3'
miRNA:   3'- -CCUGUGugGACGu----CCA--------------UUGGGU-----UGCC- -5'
28874 5' -52.7 NC_006146.1 + 53670 0.7 0.913825
Target:  5'- aGACGCuCUUGCccAGGUAgaggaugucguccgcGCCUAGCGGg -3'
miRNA:   3'- cCUGUGuGGACG--UCCAU---------------UGGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 58909 0.7 0.922958
Target:  5'- uGGCGCgACCUGCAGGgcgAGgCCAugaacuCGGc -3'
miRNA:   3'- cCUGUG-UGGACGUCCa--UUgGGUu-----GCC- -5'
28874 5' -52.7 NC_006146.1 + 170100 0.73 0.787863
Target:  5'- gGGGCcgGCGCC-GCAGGggGGgCCGGCGGg -3'
miRNA:   3'- -CCUG--UGUGGaCGUCCa-UUgGGUUGCC- -5'
28874 5' -52.7 NC_006146.1 + 48636 0.72 0.814748
Target:  5'- gGGGCGgGCUccggGCGGGU-GCCCAGCGc -3'
miRNA:   3'- -CCUGUgUGGa---CGUCCAuUGGGUUGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.